Plant FIBer expression Database

Lus10021187 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14385 137 / 9e-42 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011821
[exp]
227 / 2e-77 AT4G14385 172 / 8e-56 unknown protein
Lus10003559
[exp]
129 / 1e-38 AT4G14385 154 / 2e-48 unknown protein
Lus10033887
[exp]
126 / 1e-35 AT4G14385 134 / 4e-38 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G038700
[exp]
140 / 2e-43 AT4G14385 168 / 4e-54 unknown protein
Potri.005G223900
[exp]
139 / 8e-43 AT4G14385 166 / 2e-53 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09340 NuA4 Histone acetyltransferase subunit NuA4
Representative CDS sequence
>Lus10021187 pacid=23171410 polypeptide=Lus10021187 locus=Lus10021187.g ID=Lus10021187.BGIv1.0 annot-version=v1.0
ATGCCTTCGGGGCAGAAAGCTGGTGCGAATCCGGCAGCCATGCTCTCTTCCCTCGTAGCAAAGCGAGATAAGCTACAGGAGGAGCTCCGAAGCATCGAGA
AACAGGTGTACGAGTATGAAACCAGCTACTTGCAAGATTCGAGTCATTTCGGGAACATGTTTAAAGGGTTTGAGGGGTTTCTGGCTTCTTCAAAGAATTC
ATCCAACTTAAAGAGATCTAGGAAACTTTTACCAGAAGATAGACTCTTCTCCTTGTCATCAGTTACGTCGCCAGCAGCTGAGGAACTTGGGGTTGGCCGT
GATGATGGAAGAACTGATGTAGGTTTCGGGAGGGCTAAAGGCGGAAGCTTGCCAACAAATGGGCAGGGGAAGCCTAAGAAGGGAAGAACATCAGCAGGAC
CCAGAGATGCAAAGAAACTGAGGCCATCAAGTGAAGCAGAATTCGACGATGAAGATGAGCCCTTATGA
AA sequence
>Lus10021187 pacid=23171410 polypeptide=Lus10021187 locus=Lus10021187.g ID=Lus10021187.BGIv1.0 annot-version=v1.0
MPSGQKAGANPAAMLSSLVAKRDKLQEELRSIEKQVYEYETSYLQDSSHFGNMFKGFEGFLASSKNSSNLKRSRKLLPEDRLFSLSSVTSPAAEELGVGR
DDGRTDVGFGRAKGGSLPTNGQGKPKKGRTSAGPRDAKKLRPSSEAEFDDEDEPL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G14385 unknown protein Lus10021187
[exp]
0 1
AT1G73530 RNA-binding (RRM/RBD/RNP motif... Lus10042293
[exp]
1.4 0.9142
AT5G51140 Pseudouridine synthase family ... Lus10022437
[exp]
2.0 0.8918
AT1G12410 EMB3146, CLP2, ... NUCLEAR-ENCODED CLP PROTEASE P... Lus10028905
[exp]
2.4 0.8908
AT1G30680 toprim domain-containing prote... Lus10038433
[exp]
7.1 0.8712
AT5G26880 AGL26 AGAMOUS-like 26 (.1.2) Lus10015701
[exp]
9.2 0.8811
AT2G27970 CKS2 CDK-subunit 2 (.1) Lus10041349
[exp]
11.8 0.8402
AT5G23690 Polynucleotide adenylyltransfe... Lus10016719
[exp]
15.2 0.8737
AT1G10522 unknown protein Lus10030655
[exp]
17.0 0.8827
AT3G52750 FTSZ2-2 Tubulin/FtsZ family protein (.... Lus10021367
[exp]
19.8 0.8503
AT5G55220 trigger factor type chaperone ... Lus10000783
[exp]
20.2 0.8340

Lus10021187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.