Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04400 728 / 0 FHA, AT-PHH1, CRY2, ATCRY2 cryptochrome 2 (.1.2) AT4G08920 618 / 0 OOP2, HY4, BLU1, CRY1, ATCRY1 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) AT3G15620 171 / 7e-47 UVR3 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) AT5G24850 135 / 2e-34 CRY3 cryptochrome 3 (.1) AT2G47590 49 / 7e-06 PHR2 photolyase/blue-light receptor 2 (.1) AT4G25290 47 / 3e-05 DNA photolyases;DNA photolyases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011822 [exp] 939 / 0 AT1G04400 781 / 0.0 cryptochrome 2 (.1.2) Lus10033446 [exp] 626 / 0 AT4G08920 1009 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10020930 [exp] 610 / 0 AT4G08920 899 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10020878 [exp] 134 / 7e-34 AT5G24850 732 / 0.0 cryptochrome 3 (.1) Lus10033499 [exp] 107 / 2e-25 AT5G24850 440 / 4e-153 cryptochrome 3 (.1) Lus10022095 [exp] 107 / 1e-24 AT3G15620 725 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10000521 [exp] 62 / 2e-10 AT3G15620 295 / 7e-98 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10007880 [exp] 48 / 1e-05 AT2G47590 521 / 0.0 photolyase/blue-light receptor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G071200 [exp] 824 / 0 AT1G04400 799 / 0.0 cryptochrome 2 (.1.2) Potri.005G164700 [exp] 640 / 0 AT4G08920 999 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.002G096900 [exp] 640 / 0 AT4G08920 1017 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.008G166632 [exp] 270 / 8e-89 AT1G04400 249 / 5e-80 cryptochrome 2 (.1.2) Potri.003G060000 [exp] 175 / 3e-48 AT3G15620 908 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Potri.006G277500 [exp] 113 / 2e-26 AT5G24850 781 / 0.0 cryptochrome 3 (.1) Potri.002G204000 [exp] 52 / 6e-07 AT2G47590 530 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.014G128500 [exp] 52 / 8e-07 AT2G47590 540 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.015G129500 [exp] 44 / 0.0003 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03441 [flax] [poplar] FAD_binding_7 FAD binding domain of DNA photolyase CL0039 [flax] [poplar] HUP PF00875 [flax] [poplar] DNA_photolyase DNA photolyase
Representative CDS sequence Show only first row Show all	>Lus10021188 pacid=23171371 polypeptide=Lus10021188 locus=Lus10021188.g ID=Lus10021188.BGIv1.0 annot-version=v1.0 ATGGGTAGCAGTAGAACTATTGTTTGGTTTAGGAGAGACCTTAGGATTGAAGATAATCCAGCACTAGCAGCTGCTGCAAAAGATGGTGCAGTATTTCCTG TATATATTTGGTGTCCTGAAGAGGAAGGGCAATTTTATCCGGGCCGGGTTTCACGGTGGTGGCTGAAACAGTCACTTGCTCACTTGGGGAAATCCCTCAA ATCTCTTGGGGCTGAACTTGTCCTCATCAAAACCCATAGCACTTTTGATGCTCTCCGTGACTGTATCAATGCCATTGGAGCAACCAGAGTGGTCTTCAAT CATCTCTACGATCCGGTATCTCTTGTCCGTGATCACAGTATCAAAGACAAACTGGCAGGGCATGGAATCTCTGTTCATAGTTATAATGCAGATTTGTTAT TTGAACCATGGGAAATATATGATGATCAAGGACATGCTTTTACAACATTCAATCCATATTGGGAGAAGTGCTTGCATATGCAGATGGAGCCTGTTTCACA TCTTCGTCCATGGCGGTTGGTTCCTGCTACAGGTACAATTAAAAAGTGTGTGGTGGATGAATTGGGTCTGGAAGATGAATTGGAAAAGGCAAGCAATTCC TTGTTAGGCAGAGCATGGTCTCCAGGTTGGGGTAATGCTGACAAAGCTTTAACGGAATTTGTTGAACGACATCTAGTTCACTATTCAGAGAGCAGACTTA AAGTTGGGGGGAACTCCACTTCCCTCTTGTCCCCATATCTCCATTTTGGAGAAGTGAGCGTTAGGAAAGTTTTTCAAAGTGTTCTAATGAAGCAACTAGT GTGGGAGGAAGAACAAAATTTGAAAGGAAAAGAAAGTGTGAACCGGTTTCTTAGGTCGATTGGTTTCAGAGAATACTCCCGTTATCTTTGTTTCAATTTC CCCTTCACCCATGAGCGATCATTACTAGAACACTTGAAATACTTCCCTTGGAATGTCAACCAAGCCCATTTCAAGTCCTGGAGACAAGGAAGAACTGGGT ACCCTCTTGTTGATGCCGGAATGAGGGAGCTGTGGGCAACTGGTTGGATGCACAATAAAATAAGAGTGATCGCGTCGAGCTTTGCTGTCAAAGTTCTGCT CTTGCCATGGAGATGGGGGATGAAGTATTTCTGGGACACACTTTTGGACGCAGACCTAGAAAGTGACATCCTTGGTTGGCAGTATATATCGGGAAGCTTA CCAGATGGCCATGAACTTGAACGTATAGACAGTCCAGAGATCCAAGGTTCCAAATTTGACCCAGAAGGTGAATATGTGAGACAATGGCTGCCAGAATTGG CTAGAATGCCAACCGAATGGATTCATCACCCATGGGATGCACCTGAGATTGTGCTTAGATCTGCTGGGGTTGAACTGGGGCTAAACTATCCGATGCCTAT AATCGATCTAGACAAAGCTAAAGAACTTCTGACTTCATTTGACTTCTTCCATATTCAAGATGTGGGAAACAGAAGCGGCTGCCAGGGCTTCGAGCTCAAG CGGGACAACTGA
AA sequence Show only first row Show all	>Lus10021188 pacid=23171371 polypeptide=Lus10021188 locus=Lus10021188.g ID=Lus10021188.BGIv1.0 annot-version=v1.0 MGSSRTIVWFRRDLRIEDNPALAAAAKDGAVFPVYIWCPEEEGQFYPGRVSRWWLKQSLAHLGKSLKSLGAELVLIKTHSTFDALRDCINAIGATRVVFN HLYDPVSLVRDHSIKDKLAGHGISVHSYNADLLFEPWEIYDDQGHAFTTFNPYWEKCLHMQMEPVSHLRPWRLVPATGTIKKCVVDELGLEDELEKASNS LLGRAWSPGWGNADKALTEFVERHLVHYSESRLKVGGNSTSLLSPYLHFGEVSVRKVFQSVLMKQLVWEEEQNLKGKESVNRFLRSIGFREYSRYLCFNF PFTHERSLLEHLKYFPWNVNQAHFKSWRQGRTGYPLVDAGMRELWATGWMHNKIRVIASSFAVKVLLLPWRWGMKYFWDTLLDADLESDILGWQYISGSL PDGHELERIDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPEIVLRSAGVELGLNYPMPIIDLDKAKELLTSFDFFHIQDVGNRSGCQGFELK RDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04400		FHA, AT-PHH1, C...	cryptochrome 2 (.1.2)		Lus10021188 [exp]	0	1
AT1G77280			Protein kinase protein with ad...		Lus10028661 [exp]	1.4	0.7889
AT3G51050			FG-GAP repeat-containing prote...		Lus10014275 [exp]	16.0	0.7731
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10026688 [exp]	18.0	0.7413
AT5G45160			Root hair defective 3 GTP-bind...		Lus10036195 [exp]	18.4	0.7440
AT1G04400		FHA, AT-PHH1, C...	cryptochrome 2 (.1.2)		Lus10011822 [exp]	20.2	0.7294
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10041421 [exp]	24.2	0.7375
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10009324 [exp]	25.2	0.7455
AT5G58190		ECT10	evolutionarily conserved C-ter...		Lus10027582 [exp]	28.7	0.7236
AT4G32350			Regulator of Vps4 activity in ...		Lus10023635 [exp]	33.3	0.7298
AT5G35840		PHYC	phytochrome C (.1)		Lus10006389 [exp]	38.3	0.7241

Compare expression of checked genes

Lus10021188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.