Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08650 187 / 6e-59 ATPPCK1, PPCK1 phosphoenolpyruvate carboxylase kinase 1 (.1.2) AT3G04530 159 / 2e-48 ATPPCK2, PEPCK2, PPCK2 phosphoenolpyruvate carboxylase kinase 2 (.1) AT1G12580 129 / 1e-34 PEPKR1 phosphoenolpyruvate carboxylase-related kinase 1 (.1) AT1G12680 127 / 1e-34 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 (.1) AT3G20410 128 / 2e-34 CPK9 calmodulin-domain protein kinase 9 (.1) AT4G04720 127 / 5e-34 CPK21 calcium-dependent protein kinase 21 (.1) AT5G04870 127 / 6e-34 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT3G10660 127 / 7e-34 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT4G21940 122 / 3e-32 CPK15 calcium-dependent protein kinase 15 (.1.2) AT2G41860 122 / 3e-32 CPK14 calcium-dependent protein kinase 14 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042560 [exp] 211 / 2e-68 AT1G08650 344 / 1e-119 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Lus10014657 [exp] 200 / 3e-64 AT1G08650 351 / 2e-122 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Lus10011824 [exp] 195 / 2e-63 AT1G08650 227 / 3e-75 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Lus10038889 [exp] 134 / 8e-37 AT1G12580 555 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10015009 [exp] 134 / 1e-36 AT1G12580 549 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10021531 [exp] 128 / 2e-34 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10041132 [exp] 126 / 4e-34 AT1G12680 608 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10040071 [exp] 127 / 6e-34 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10036464 [exp] 125 / 2e-33 AT1G12680 607 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G071400 [exp] 290 / 7e-100 AT1G08650 298 / 1e-101 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.008G166500 [exp] 289 / 3e-99 AT1G08650 287 / 2e-97 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.013G046100 [exp] 216 / 1e-70 AT3G04530 366 / 1e-128 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.019G018100 [exp] 212 / 4e-69 AT3G04530 379 / 2e-133 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.012G134600 [exp] 144 / 3e-40 AT1G12580 569 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.003G120800 [exp] 137 / 6e-38 AT1G12580 605 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.015G136900 [exp] 133 / 2e-36 AT1G12580 587 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.005G251500 [exp] 131 / 6e-36 AT1G12680 662 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.004G015500 [exp] 128 / 2e-34 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.006G040500 [exp] 124 / 5e-33 AT2G41140 866 / 0.0 CDPK-related kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10021190 pacid=23171374 polypeptide=Lus10021190 locus=Lus10021190.g ID=Lus10021190.BGIv1.0 annot-version=v1.0 ATGAGCGACGCGTTGAGAAGAGACTACCAAATCTGCGACGAGATCGGCCGGGGACGCTTCGGCACCGTCTTCAAGTGCGATTCCCACTCCACCGGCGAAT CCTTCGCCGTCAAATCCATCGACAAATCCCGTACCGGCGGCGATTCCCTGGACGCTCAGTGCCTCTTGACGGAGCCCAAGATTCTGAGCCTCCTCTCCCC TCACCCGCATCTGATTCAGCTCCACCGCACCTACGAGGACGATTCCCATCTCCACATGGTAATGGATCTCTGCCCCAATTCTGATCTCCACGCCCTAATC GTGGCCAACGGCGGCGGACTCCCGGAGGCGGAAGCCAGGTCGATCTTCACTCAATTGATGAGCGCAATCTCGCACTGCCACTGGAACGGGGTGGTCCACA GGGACGTGAAGCCGGACAATGTTCTCATGCTCGCCGGTTTTCCTCCGTTCTACGGGGAGACAGCGGTGGAGATCTTCGACGCCGTGTTGAGAGGGAATCT GAGGTTTCCGACTAGGGTTTTCCAGTCGGTGTCCCCGGGTGCGAAGGATCTGGTGAGGAGGATGCTGTGTAAAGATGTGTCCAGAAGATTCTCTGCTGAG CAAGTGCTTTGGCATCCATGGGTGAAAAGTTAA
AA sequence Show only first row Show all	>Lus10021190 pacid=23171374 polypeptide=Lus10021190 locus=Lus10021190.g ID=Lus10021190.BGIv1.0 annot-version=v1.0 MSDALRRDYQICDEIGRGRFGTVFKCDSHSTGESFAVKSIDKSRTGGDSLDAQCLLTEPKILSLLSPHPHLIQLHRTYEDDSHLHMVMDLCPNSDLHALI VANGGGLPEAEARSIFTQLMSAISHCHWNGVVHRDVKPDNVLMLAGFPPFYGETAVEIFDAVLRGNLRFPTRVFQSVSPGAKDLVRRMLCKDVSRRFSAE QVLWHPWVKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04530		ATPPCK2, PEPCK2...	phosphoenolpyruvate carboxylas...		Lus10021190 [exp]	0	1
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10041366 [exp]	5.3	0.8538
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10004821 [exp]	8.2	0.8485
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10025789 [exp]	8.9	0.8389
					Lus10013206 [exp]	20.3	0.8076
AT3G15890			Protein kinase superfamily pro...		Lus10011490 [exp]	21.8	0.8218
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10000397 [exp]	23.8	0.8030
AT3G06390			Uncharacterised protein family...		Lus10012808 [exp]	28.0	0.8453
AT3G47160			RING/U-box superfamily protein...		Lus10006447 [exp]	29.0	0.8188
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10041569 [exp]	31.5	0.7995
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10012041 [exp]	36.3	0.8341

Compare expression of checked genes

Lus10021190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.