Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43350 752 / 0 PHT1;1, ATPT1 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) AT5G43370 746 / 0 PHT1;2, APT1, PHT2 ARABIDOPSIS PHOSPHATE TRANSPORTER 1, phosphate transporter 2 (.1.2) AT5G43360 746 / 0 PHT1;3, ATPT4, PHT3 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) AT2G38940 743 / 0 PHT1;4, ATPT2 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) AT3G54700 738 / 0 PHT1;7 phosphate transporter 1;7 (.1) AT2G32830 723 / 0 PHT1;5, PHT5 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) AT5G43340 632 / 0 PHT1;6, PHT6 PHOSPHATE TRANSPORTER 6, phosphate transporter 1;6 (.1) AT1G76430 409 / 2e-137 PHT1;9 phosphate transporter 1;9 (.1) AT1G20860 397 / 9e-133 PHT1;8 phosphate transporter 1;8 (.1) AT4G08878 305 / 9e-101 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011826 [exp] 934 / 0 AT5G43360 868 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10016635 [exp] 741 / 0 AT3G54700 888 / 0.0 phosphate transporter 1;7 (.1) Lus10003560 [exp] 726 / 0 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10014754 [exp] 725 / 0 AT2G38940 904 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Lus10033886 [exp] 721 / 0 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10012860 [exp] 566 / 0 AT5G43360 669 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10030506 [exp] 564 / 0 AT5G43360 665 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10027575 [exp] 528 / 0 AT5G43360 622 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10022548 [exp] 501 / 8e-175 AT3G54700 578 / 0.0 phosphate transporter 1;7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G071600 [exp] 790 / 0 AT2G38940 762 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G071700 [exp] 778 / 0 AT2G38940 764 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G072000 [exp] 774 / 0 AT2G38940 765 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.005G223600 [exp] 757 / 0 AT3G54700 856 / 0.0 phosphate transporter 1;7 (.1) Potri.001G318500 [exp] 731 / 0 AT2G32830 813 / 0.0 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) Potri.002G038900 [exp] 723 / 0 AT3G54700 823 / 0.0 phosphate transporter 1;7 (.1) Potri.010G071500 [exp] 718 / 0 AT2G38940 794 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.005G175500 [exp] 692 / 0 AT3G54700 728 / 0.0 phosphate transporter 1;7 (.1) Potri.005G175700 [exp] 665 / 0 AT3G54700 699 / 0.0 phosphate transporter 1;7 (.1) Potri.019G061900 [exp] 549 / 0 AT5G43360 637 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10021191 pacid=23171403 polypeptide=Lus10021191 locus=Lus10021191.g ID=Lus10021191.BGIv1.0 annot-version=v1.0 ATGGCGAGAGAGCAACTCGGAGTGCTCACAGCACTCGATGTCGCTAAAACCCAACTCTATCATTTCACCGCTATCGTCATCGCCGGCATGGGATTCTTCA CCGACGCATACGACCTCTTCTGCATCTCCCTCGTCAGCAAATTGCTCGGCCGAATTTACTACACCGACACTAGTTTGCCTAAACCAGGCTCTCTACCTCC CAACGTCGCCGCAGCCGTCAACGGCGTCGCACTCTGCGGCACCTTAGCGGGCCAGCTCTTCTTCGGCTGGCTGGGAGACAAGCTCGGCCGCAAGAAAGTG TACGGAATCACCCTCATACTCATGGTGGTCTGCTCCTTAGCATCGGGACTCTCCTTCAGCCACGAGCCTTCAGCAGTAATAGCCACACTCTGCTTCTTCC GGTTCTGGCTCGGCTTCGGAATCGGCGGCGATTACCCTCTCTCTGCTACCATCATGTCCGAGTATGCCAACAAGAAGACAAGGGGAGCCTTCATCGCCGC CGTGTTCGCGATGCAAGGGTTTGGAATCTTGGGCGGAGGAATCGTCGCCTTGGTCGTCTCCTCCGCTTTCGACCACAGGTTCAGCGCTCCTTCCTACGCG ACGGACCGAGCTGCCTCTCTGGCTCCTCAGGCGGACTACGTGTGGCGGATAATTCTGATGTTCGGCGCAATCCCCGCCGGCGTCACTTACTACTGGCGGA TGAAGATGCCGGAGACTGCCCGGTACACCGCGTTGGTGGCGAAGAACGCCAAGCAGGCCGCGCAGGACATGTCGAAGGTGCTGAATGTGGATCTGGAAGC AGAGGAAGAGAAGGTGCAAGGTATGGCCGAGAATTCAGCTAACAAATTCGGGCTGTTCTCGAGTGAGTTCCTCAAAAGGCATGGGCTCCACCTGCTGGGG ACCACATCCACGTGGTTCTTACTTGACATCGCCTTCTACAGCCAGAACCTATTCCAGAAGGATATCTTCACCGCCATCAATTGGATACCGCCGGCAGACA CCATGAACGCAATTCACGAGGTCTATCGGATTGCTAGGGCCCAGACTTTGATCGCGATGTGCAGTACGGTTCCAGGGTACTGGTTCACGGTGTTTTTTAT CGACGTGATCGGGAGGTTCGCGATTCAGATGATGGGGTTCTTCTTCATGACGGTGTTCATGTTCGCCCTGGCGATTCCGTACCACCACTGGACTTTGAAG CCCAACCGGATCGGGTTTGTGGTGATGTACTCGTTGACGTTCTTCTTCGCGAATTTCGGGCCGAATGCGACAACGTTTGTGGTGCCGGCGGAGATATTCC CGGCGAGGGAGATATTCCCTGCGAGATGGAGGACGACTTGCCACGGGATATCGGCGGCGGCGGGGAAGGCAGGGGCGATAGTGGGTGCGTTTGGGTTTTT GTACGCGGCTCAGTCGCAGGATCCGGCGAAGGTGGATAAGGGGTATAGCCCAGGGATTGGGGTGAAGAATTCGTTGATAGCGTTGGGGTGTGTTAATTTC CTCGGGATGGTGTTTACGTTGTTGGTGCCTGAACCGAATGGGAAATCGCTTGAGGCTTTGACCGGAGAAAATGACGAGGAGGAGAGCTCCGAGGAGGCTG CGGCCAAAGGCGGGGCTGTGATTCCTGAACAAGAGCAGTAA
AA sequence Show only first row Show all	>Lus10021191 pacid=23171403 polypeptide=Lus10021191 locus=Lus10021191.g ID=Lus10021191.BGIv1.0 annot-version=v1.0 MAREQLGVLTALDVAKTQLYHFTAIVIAGMGFFTDAYDLFCISLVSKLLGRIYYTDTSLPKPGSLPPNVAAAVNGVALCGTLAGQLFFGWLGDKLGRKKV YGITLILMVVCSLASGLSFSHEPSAVIATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILGGGIVALVVSSAFDHRFSAPSYA TDRAASLAPQADYVWRIILMFGAIPAGVTYYWRMKMPETARYTALVAKNAKQAAQDMSKVLNVDLEAEEEKVQGMAENSANKFGLFSSEFLKRHGLHLLG TTSTWFLLDIAFYSQNLFQKDIFTAINWIPPADTMNAIHEVYRIARAQTLIAMCSTVPGYWFTVFFIDVIGRFAIQMMGFFFMTVFMFALAIPYHHWTLK PNRIGFVVMYSLTFFFANFGPNATTFVVPAEIFPAREIFPARWRTTCHGISAAAGKAGAIVGAFGFLYAAQSQDPAKVDKGYSPGIGVKNSLIALGCVNF LGMVFTLLVPEPNGKSLEALTGENDEEESSEEAAAKGGAVIPEQEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43350		PHT1;1, ATPT1	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10021191 [exp]	0	1
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Lus10009427 [exp]	2.8	0.9185
AT5G43360		PHT1;3, ATPT4, ...	PHOSPHATE TRANSPORTER 3, phosp...		Lus10011826 [exp]	3.5	0.9067
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10011875 [exp]	3.9	0.8942
AT5G50160		ATFRO8, FRO8	ferric reduction oxidase 8 (.1...		Lus10019488 [exp]	3.9	0.8915
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10041535 [exp]	4.2	0.8898
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10024584 [exp]	11.8	0.8893
AT1G08170			Histone superfamily protein (....		Lus10041351 [exp]	12.2	0.8927
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10029360 [exp]	14.1	0.8617
AT4G31680	B3	REM8	Transcriptional factor B3 fami...		Lus10010080 [exp]	16.2	0.8608
AT5G24620			Pathogenesis-related thaumatin...		Lus10023896 [exp]	18.5	0.8870

Compare expression of checked genes

Lus10021191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.