Plant FIBer expression Database

Lus10021192 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25630 252 / 3e-79 BGLU14 beta glucosidase 14 (.1)
AT2G44480 224 / 4e-68 BGLU17 beta glucosidase 17 (.1.2)
AT1G66280 211 / 4e-63 BGLU22 Glycosyl hydrolase superfamily protein (.1)
AT1G26560 211 / 4e-63 BGLU40 beta glucosidase 40 (.1)
AT5G42260 205 / 4e-61 BGLU12 beta glucosidase 12 (.1)
AT3G60120 204 / 3e-60 BGLU27 beta glucosidase 27 (.1)
AT1G47600 203 / 4e-60 BGLU34, TGG4 THIOGLUCOSIDE GLUCOHYDROLASE 4, beta glucosidase 34 (.1.2)
AT2G44450 202 / 5e-60 BGLU15 beta glucosidase 15 (.1)
AT5G44640 202 / 5e-60 BGLU13 beta glucosidase 13 (.1)
AT1G51470 202 / 6e-60 TGG5, BGLU35 THIOGLUCOSIDE GLUCOHYDROLASE 5, beta glucosidase 35 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011828
[exp]
508 / 1e-175 AT2G44480 438 / 4e-146 beta glucosidase 17 (.1.2)
Lus10030516
[exp]
479 / 1e-166 AT2G44480 476 / 4e-164 beta glucosidase 17 (.1.2)
Lus10012868
[exp]
470 / 2e-161 AT5G24550 435 / 1e-145 beta glucosidase 32 (.1)
Lus10030515
[exp]
426 / 3e-147 AT2G44450 281 / 4e-89 beta glucosidase 15 (.1)
Lus10030577
[exp]
401 / 4e-136 AT5G24550 461 / 2e-157 beta glucosidase 32 (.1)
Lus10030576
[exp]
391 / 7e-134 AT2G44480 400 / 6e-136 beta glucosidase 17 (.1.2)
Lus10012869
[exp]
382 / 7e-129 AT5G24550 467 / 4e-160 beta glucosidase 32 (.1)
Lus10030518
[exp]
376 / 2e-126 AT5G24550 485 / 3e-167 beta glucosidase 32 (.1)
Lus10039513
[exp]
369 / 9e-124 AT2G44480 472 / 3e-162 beta glucosidase 17 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G015100
[exp]
249 / 9e-78 AT5G44640 553 / 0.0 beta glucosidase 13 (.1)
Potri.003G211100
[exp]
237 / 3e-73 AT5G44640 569 / 0.0 beta glucosidase 13 (.1)
Potri.T085301
[exp]
237 / 3e-73 AT5G44640 575 / 0.0 beta glucosidase 13 (.1)
Potri.001G227200
[exp]
232 / 2e-71 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2)
Potri.001G227400
[exp]
231 / 2e-71 AT2G44480 513 / 3e-180 beta glucosidase 17 (.1.2)
Potri.002G219600
[exp]
232 / 3e-71 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2)
Potri.001G223800
[exp]
232 / 3e-71 AT2G44480 527 / 0.0 beta glucosidase 17 (.1.2)
Potri.001G223900
[exp]
232 / 3e-71 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2)
Potri.001G223708
[exp]
232 / 4e-71 AT2G44480 528 / 0.0 beta glucosidase 17 (.1.2)
Potri.001G223712
[exp]
232 / 4e-71 AT2G44480 528 / 0.0 beta glucosidase 17 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0058 Glyco_hydro_tim PF00232 Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence
>Lus10021192 pacid=23171405 polypeptide=Lus10021192 locus=Lus10021192.g ID=Lus10021192.BGIv1.0 annot-version=v1.0
ATGGCTCTACAAATCGTAGTGATGATGTTTCTGCTGGCAGCTGGTATCTCTGAGTTTGTGATGATATCAGCTGATCCAATTCCAAGTATTGACCCTTGCT
CAACATCAAACTACCTATACAAACCTTCCAAAGAGCTTCCCCATGGCCGTTATAGTTTCCCTCCTGGCTTTATCTTTGGCACTGCCACTTCTTCTTTTCA
GATCGAGGGAGCTTCAGGTTTTGCGTATGGGAAAGGTCCGAGCATTTGGGACAGATTTACCCATCGATATCCAGATAGGATTTTAGAAGGTGGAAATGGT
GATGTAGCGATAGATCATTATCATAAGTACAAGGAAGGAATCAAATTTTACCACGACCTCCTCGATGAACTCATTAAAAATGGGATCGAGCCTTTTGTCA
CAATATGGCATTGGGATACCCCTCAGGCTCTTGAAGCTGAGTATGGTGGCTTTCTAAGCCGTGATATTATAGCATTTAAACTAGGAAACTCTGCAACCGA
GCCTTACATTGTTTCCCATCATCAACTTCTTGCTCATTCCGCTGCTTACCACTTGTACAAAAACAAGTATCGGAATCTTACTGGGGAAATAGGAATAACT
TATGTCTCACACTGGTTTCTTCCTTACTCTAATGCAACTGAAGATATTGATGCTGCTCACAGAGCTCAAGATTGGATGTATGGCTGGTACATGGATCCAA
TCACCTATGGTTACTATCCTAGAACAATGGTGGATTTATTGGGATCTCGTTTACCTAAATTTACACTAGAGGAATCACGCTTGCTTAGAAAGTCATACGA
CTTTTTAGGCATCAACTATTACACTAGATTATCAGAGAAGGACAATGATACACAAACACTTGCAGAGGCACTACATGACAAGATGAGGATTGATTTTTAC
AACAGTCATCTTACAAGTGTTCTGCAAGCCATCAATGAAACACAGGTAAACGTAAAAGGGTTCTTTGCGTGGTCATTCGCAGACAACTTTGAATGGAACG
AAGGATACACAGTTAGGTTTGGGTTGTACTACGTTAACTACACCGATCTCTCAAGGCACCCAAAGGACTCTGCATGCTGGTACACTAACTTTTGCAACAA
GACCCAACCAAAGACGAAGAACTTGTCTACCAAATTTGATCTTGATCAGCTCATCACCACAAGTGCTGCTCCCGAAGGCCTCTCTCCCTCTGCTGGCCGC
CTTTAA
AA sequence
>Lus10021192 pacid=23171405 polypeptide=Lus10021192 locus=Lus10021192.g ID=Lus10021192.BGIv1.0 annot-version=v1.0
MALQIVVMMFLLAAGISEFVMISADPIPSIDPCSTSNYLYKPSKELPHGRYSFPPGFIFGTATSSFQIEGASGFAYGKGPSIWDRFTHRYPDRILEGGNG
DVAIDHYHKYKEGIKFYHDLLDELIKNGIEPFVTIWHWDTPQALEAEYGGFLSRDIIAFKLGNSATEPYIVSHHQLLAHSAAYHLYKNKYRNLTGEIGIT
YVSHWFLPYSNATEDIDAAHRAQDWMYGWYMDPITYGYYPRTMVDLLGSRLPKFTLEESRLLRKSYDFLGINYYTRLSEKDNDTQTLAEALHDKMRIDFY
NSHLTSVLQAINETQVNVKGFFAWSFADNFEWNEGYTVRFGLYYVNYTDLSRHPKDSACWYTNFCNKTQPKTKNLSTKFDLDQLITTSAAPEGLSPSAGR
L

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G24550 BGLU32 beta glucosidase 32 (.1) Lus10021192
[exp]
0 1

Lus10021192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.