Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04360 234 / 2e-74 RING/U-box superfamily protein (.1) AT5G43420 231 / 2e-73 RING/U-box superfamily protein (.1) AT1G72220 96 / 4e-22 RING/U-box superfamily protein (.1) AT1G72200 96 / 7e-22 RING/U-box superfamily protein (.1) AT5G17600 91 / 3e-20 RING/U-box superfamily protein (.1) AT2G34990 89 / 5e-20 RING/U-box superfamily protein (.1) AT1G23980 90 / 7e-20 RING/U-box superfamily protein (.1) AT1G22500 89 / 1e-19 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT3G18930 88 / 2e-19 RING/U-box superfamily protein (.1.2) AT3G03550 87 / 3e-19 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000710 [exp] 131 / 2e-35 AT1G04360 155 / 3e-44 RING/U-box superfamily protein (.1) Lus10024881 [exp] 128 / 2e-34 AT1G04360 153 / 2e-43 RING/U-box superfamily protein (.1) Lus10031515 [exp] 95 / 7e-22 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10015901 [exp] 93 / 4e-21 AT1G72220 175 / 3e-51 RING/U-box superfamily protein (.1) Lus10012745 [exp] 92 / 7e-21 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10015167 [exp] 92 / 7e-21 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10013618 [exp] 89 / 6e-20 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10000333 [exp] 90 / 8e-20 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10004460 [exp] 90 / 9e-20 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G072700 [exp] 310 / 1e-104 AT5G43420 300 / 7e-100 RING/U-box superfamily protein (.1) Potri.008G165900 [exp] 299 / 5e-100 AT1G04360 312 / 2e-104 RING/U-box superfamily protein (.1) Potri.002G039700 [exp] 213 / 9e-67 AT5G43420 246 / 4e-79 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 109 / 8e-27 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 102 / 2e-24 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 99 / 3e-23 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.001G235100 [exp] 89 / 9e-21 AT1G04360 98 / 3e-24 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 91 / 3e-20 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 90 / 3e-20 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 90 / 4e-20 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10021197 pacid=23171356 polypeptide=Lus10021197 locus=Lus10021197.g ID=Lus10021197.BGIv1.0 annot-version=v1.0 ATGGATCCCAACCCGCCGCCGCCGCCTCTACATTCCTCCGACAGCGGCTTCCCGATCATAGCCGTCGCAGTAATCGGAATCATAGCCACCGGGTTCCGCG CGGTTCGCTACTACGTCTTCGTCATCAAATGCTGCCTCAATTGGCACCGGATCGACGTCCTCCGAAGATTCTCGTTATCCAGAAGCCGAACCCACGATCA GGCACTAATCGCTGCTCGTAATTCTTCGTGCCCAACGGAGATTCGCGGGCTCGATGAATCGGTCATAAGGTCGATCCCTGTTGTCAAGTACAAGAAAACA GAACAGGAGAGGAAACAGGGGAAGTTGGAAACAGAGGACGCGAGTTCCCCGGAATGCGCCGTCTGTTTGAACGAGTTCGTGGAGGACGAGAAGCTTCGGA GGATACCCAATTGCTGCCACGTATTCCACATTGACTGCATCGACGCCTGGCTTCAGAACAACTCCAACTGCCCGCTCTGCCGCACCAGCATTTCCCACTA CCCCATCGGGTTCCCGTTGGGTTTCGGGTCGGATCCAAGCCCAACTCCATACCCGGAAAGGATCGAGAACATCGGGGGAGACGAAGAGTACGTGGTGATT GAATTGGGGAATTACGTGACGACGAGCCGGCAGAGCTCGACGGAGAGGACGCTGAGAGAGGCTCATGAGAGGCTAAATTCAGGAGAAGAGAAGAAATGGA CGAAGAAGATGAGGAGCATGGGAGATGAGTGTATTGACACGAGAGGAGGGAAGAAGGACGGTGGTGGATTTGGGATTCAGCCGATACGGCGGTCTTTTTC GATGGATTCGTCGGCGGATCGGCAGCTTCTGATGAAAATTCAAGAGATTGTCCAACAGCAGCAGCAGAGCTGCAATGGGCAGGATGCAGAGATTAGTCCT GTCGAAGGTTGTAGTAGTGGTAGTAACCGAATCAGGAGGAATTTCTTTTCCTTCGGTCATAATAGAAGAGGATCCAAAACTTCAGTCTTGCCTGTATATC TGGACCCATAA
AA sequence Show only first row Show all	>Lus10021197 pacid=23171356 polypeptide=Lus10021197 locus=Lus10021197.g ID=Lus10021197.BGIv1.0 annot-version=v1.0 MDPNPPPPPLHSSDSGFPIIAVAVIGIIATGFRAVRYYVFVIKCCLNWHRIDVLRRFSLSRSRTHDQALIAARNSSCPTEIRGLDESVIRSIPVVKYKKT EQERKQGKLETEDASSPECAVCLNEFVEDEKLRRIPNCCHVFHIDCIDAWLQNNSNCPLCRTSISHYPIGFPLGFGSDPSPTPYPERIENIGGDEEYVVI ELGNYVTTSRQSSTERTLREAHERLNSGEEKKWTKKMRSMGDECIDTRGGKKDGGGFGIQPIRRSFSMDSSADRQLLMKIQEIVQQQQQSCNGQDAEISP VEGCSSGSNRIRRNFFSFGHNRRGSKTSVLPVYLDP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04360			RING/U-box superfamily protein...		Lus10021197 [exp]	0	1
AT2G35860		FLA16	FASCICLIN-like arabinogalactan...		Lus10021247 [exp]	2.8	0.9430
AT3G19460			Reticulon family protein (.1.2...		Lus10027867 [exp]	3.7	0.9295
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023361 [exp]	5.3	0.9368
AT1G13900			Purple acid phosphatases super...		Lus10026652 [exp]	8.5	0.9251
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10014234 [exp]	10.0	0.9313
AT3G56820			unknown protein		Lus10010438 [exp]	12.9	0.8699
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10008677 [exp]	13.6	0.9294
AT5G67540			Arabinanase/levansucrase/inver...		Lus10019280 [exp]	14.3	0.9154
AT1G14890			Plant invertase/pectin methyle...		Lus10037919 [exp]	14.8	0.9129
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029232 [exp]	15.2	0.8814

Compare expression of checked genes

Lus10021197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.