Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43430 387 / 8e-138 ETFBETA electron transfer flavoprotein beta (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022185 [exp] 465 / 2e-168 AT5G43430 419 / 2e-150 electron transfer flavoprotein beta (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G165800 [exp] 430 / 9e-155 AT5G43430 429 / 2e-154 electron transfer flavoprotein beta (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01012 [flax] [poplar] ETF Electron transfer flavoprotein domain
Representative CDS sequence Show only first row Show all	>Lus10021198 pacid=23171411 polypeptide=Lus10021198 locus=Lus10021198.g ID=Lus10021198.BGIv1.0 annot-version=v1.0 ATGAAGATAATGGTGGCCGTAAAACGAGTGATCGACTACGCCGTCAAAATCAGAGTCAGACCCGACAAGAGTGGTGTAGAGACTCAAAACGTCAAGATGT CGATGAACCCATTCTGTGAGATAGCACTTGAAGAGGCCCTTCGAATCAAGGAAGCCGGATTAGCTTCTGAAGTTGTTGCCGTCAGTATGGGCCCTAAACA GTCCGTCGATACTCTGAGGACGGGGCTCGCCATGGGCGCCGATCGAGGGATTCTCGTCGAGACCACTGACCATTTGTTTCCTCTAGCTGTTGCTAAGCTT CTCAAGGTTCTTGTGGAGGTGGAGAAGCCTGGTCTGATTATTTTGGGGAAACAGGCCATTGATGATGATTGTAATCAAACTGGCCAAATGGTGGCTGGCC TACTTAATTGGCCTCAGGGGACATTTGCTTCCAAGGTCTTGCTTGACATGGAGAAACAGGAAGTAACCGTTGAACGAGAAGTGGATGGTGGTCTTGAGAC TGTCTGTTTAAACTTACCTGCAGTTATCACCACTGATCTAAGACTGAACCAACCGAGGTATGCCACGCTACCAAATATTATGAAAGCGAAATCAAAGCTG ATCAAGAAATACACACCGGAGGAGCTGAATGTGGAAACGAAGTCAGATGTAGAGGTTATTGAAGTCACTGAACCTCCAAAGAGAAAGGCAGGGGTGCTTG TTTCTTCAGTGGACGAGTTGGTAGACAAGCTTAAAAATGAAGCTCATGTCATATAA
AA sequence Show only first row Show all	>Lus10021198 pacid=23171411 polypeptide=Lus10021198 locus=Lus10021198.g ID=Lus10021198.BGIv1.0 annot-version=v1.0 MKIMVAVKRVIDYAVKIRVRPDKSGVETQNVKMSMNPFCEIALEEALRIKEAGLASEVVAVSMGPKQSVDTLRTGLAMGADRGILVETTDHLFPLAVAKL LKVLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLNWPQGTFASKVLLDMEKQEVTVEREVDGGLETVCLNLPAVITTDLRLNQPRYATLPNIMKAKSKL IKKYTPEELNVETKSDVEVIEVTEPPKRKAGVLVSSVDELVDKLKNEAHVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10021198 [exp]	0	1
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10013026 [exp]	2.8	0.9561
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10030810 [exp]	4.2	0.9437
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10020740 [exp]	5.5	0.9419
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10003149 [exp]	6.9	0.9432
AT1G11380			PLAC8 family protein (.1)		Lus10002586 [exp]	7.5	0.9437
AT2G30140			UDP-Glycosyltransferase superf...		Lus10026394 [exp]	10.6	0.9379
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Lus10014801 [exp]	11.2	0.9244
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10031510 [exp]	11.2	0.9399
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016920 [exp]	11.5	0.9239
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10013218 [exp]	11.6	0.9361

Compare expression of checked genes

Lus10021198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.