Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14410 208 / 2e-67 bHLH bHLH104 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G23210 190 / 1e-59 bHLH bHLH34, bHLH034 basic Helix-Loop-Helix 34, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G54680 160 / 4e-49 bHLH bHLH105, ILR3 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G51070 160 / 5e-49 bHLH bHLH115 basic Helix-Loop-Helix 115, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G19860 82 / 1e-18 bHLH bHLH121 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G36060 71 / 1e-14 bHLH bHLH11, bHLH011 basic Helix-Loop-Helix 11, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G63650 48 / 2e-06 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G46760 47 / 4e-06 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G17880 47 / 6e-06 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G41315 46 / 7e-06 bHLH MYC6.2, GL3 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022186 [exp] 392 / 8e-141 AT4G14410 218 / 4e-71 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10041148 [exp] 285 / 2e-98 AT4G14410 211 / 1e-68 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10021876 [exp] 256 / 3e-87 AT4G14410 214 / 4e-70 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10020069 [exp] 169 / 2e-52 AT5G54680 231 / 5e-77 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10043076 [exp] 152 / 5e-46 AT5G54680 330 / 8e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011167 [exp] 152 / 6e-46 AT5G54680 331 / 4e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10028456 [exp] 59 / 2e-10 AT3G19860 225 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10041908 [exp] 59 / 3e-10 AT3G19860 224 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10019247 [exp] 44 / 7e-05 AT4G37850 217 / 3e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G072900 [exp] 253 / 5e-86 AT4G14410 230 / 7e-76 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.008G165700 [exp] 249 / 2e-84 AT4G14410 181 / 1e-56 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.011G031000 [exp] 172 / 7e-54 AT5G54680 264 / 2e-89 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G031800 [exp] 157 / 9e-48 AT5G54680 226 / 8e-75 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G132400 [exp] 155 / 6e-47 AT5G54680 222 / 7e-73 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G416600 [exp] 149 / 3e-44 AT5G54680 223 / 4e-73 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G113400 [exp] 80 / 1e-17 AT3G19860 211 / 1e-66 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.009G129600 [exp] 79 / 3e-17 AT3G19860 238 / 2e-76 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G168100 [exp] 76 / 3e-16 AT3G19860 250 / 4e-82 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.015G142700 [exp] 58 / 4e-10 AT3G47640 170 / 1e-52 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10021199 pacid=23171395 polypeptide=Lus10021199 locus=Lus10021199.g ID=Lus10021199.BGIv1.0 annot-version=v1.0 ATGGATTCAATACACGACCCCAATTGCTGGGATTTTCTCGATAATATCATTGACGAAACTGCGTCTCCGTCTTTGCTTTGGCCCAGCAGTAATAGTGGGA GTGTGGAAATTGATTTGTCTTCCAGTGGTGTAGTTTCCCAACAGAAGGAACCCGCACGCAAGAGGGGAAGTGGTGGTGATTCATGTAACAGGCCAGGAGC CAAAGCATGTCGTGAGAAGCTGAGGAGAGAGAGGTTGAATGACAGATTTCAGGATCTAACTGCCGTTTTAGACCCTGGGAGACATGTTAAAGCTGATAAA CCCGCCATACTTGATGATACCATTAGACTTTTGAACCAGCTAAAATCCGAGGCACAGGAGCTCAAAGAAACTAATGAAAAACTTCAAGAGGAAATAAACT GTCTCAAGGCTGAAAAGAATGAACTCCGCGAGGAGAAACTTACCCTCAAGGCAGACAAGGAAAAGATTGAGCAGCAGGTGAAAGCTATGGCTGTTCCTCC TTCAGGGTTTATGCCAGCACACCCAGCAGCTACCTATCATGCTGGTGCAGCAAAGATGCCAATGTATCCAGGCTACAGTCTGATACCTATGTGGCAGTAT TTACCTCCTACTGTGTATGACACATCCCGTGATCACGAGTTAAGGCCTCCAGCTGCTTAG
AA sequence Show only first row Show all	>Lus10021199 pacid=23171395 polypeptide=Lus10021199 locus=Lus10021199.g ID=Lus10021199.BGIv1.0 annot-version=v1.0 MDSIHDPNCWDFLDNIIDETASPSLLWPSSNSGSVEIDLSSSGVVSQQKEPARKRGSGGDSCNRPGAKACREKLRRERLNDRFQDLTAVLDPGRHVKADK PAILDDTIRLLNQLKSEAQELKETNEKLQEEINCLKAEKNELREEKLTLKADKEKIEQQVKAMAVPPSGFMPAHPAATYHAGAAKMPMYPGYSLIPMWQY LPPTVYDTSRDHELRPPAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10021199 [exp]	0	1
AT3G14590		NTMCTYPE6.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10042475 [exp]	5.0	0.8814
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10005651 [exp]	7.1	0.7660
AT1G09740			Adenine nucleotide alpha hydro...		Lus10009272 [exp]	8.0	0.7902
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10005650 [exp]	9.2	0.7644
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10002885 [exp]	19.5	0.8112
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024648 [exp]	19.8	0.8103
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012183 [exp]	29.5	0.8075
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Lus10009782 [exp]	34.6	0.7893
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Lus10032117 [exp]	36.2	0.8059
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Lus10001912 [exp]	37.5	0.7943

Compare expression of checked genes

Lus10021199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.