Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18200 119 / 5e-33 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT2G39510 113 / 6e-30 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 112 / 2e-29 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 109 / 2e-28 WAT1 Walls Are Thin 1 (.1.2) AT5G13670 107 / 7e-28 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 107 / 9e-28 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G43650 104 / 6e-27 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G21890 105 / 8e-27 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 104 / 9e-27 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 104 / 2e-26 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022187 [exp] 191 / 6e-60 AT4G08300 270 / 7e-88 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024301 [exp] 120 / 4e-32 AT1G75500 575 / 0.0 Walls Are Thin 1 (.1.2) Lus10010647 [exp] 117 / 1e-31 AT1G75500 492 / 6e-175 Walls Are Thin 1 (.1.2) Lus10029465 [exp] 117 / 2e-31 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029464 [exp] 117 / 2e-31 AT2G39510 429 / 2e-150 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 117 / 3e-31 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023211 [exp] 116 / 4e-31 AT4G30420 378 / 1e-130 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005964 [exp] 115 / 1e-30 AT2G39510 433 / 7e-152 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 115 / 1e-30 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G165600 [exp] 203 / 1e-64 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 177 / 1e-54 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 120 / 1e-32 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G042900 [exp] 119 / 3e-32 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.011G148400 [exp] 119 / 5e-32 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 118 / 9e-32 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.006G082700 [exp] 116 / 2e-31 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 116 / 6e-31 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G182700 [exp] 115 / 1e-30 AT4G01440 298 / 2e-99 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 115 / 2e-30 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10021200 pacid=23171399 polypeptide=Lus10021200 locus=Lus10021200.g ID=Lus10021200.BGIv1.0 annot-version=v1.0 ATGGAGTCGGAGCTGGAGCTGAAGAGGAGGACTCCCGTGTGCAAGATGTTGAAGGAGCATGTCGGCAAAGCAGGAGAGAGAAACGTGCAGGCGTACACAG TGAAACGATATCCTGCTCGGTTGTCGTCCACGGCATGGATGAGCGCACTTGGAACAGTTCAATCGGCTGTCTTCACCATCAACGTACAACATAAGAAAGC TGCTTGGATCGTCGGTTTCAATATCGATCTATGGTCTATTATCTATGGCGGAGTGGTAATATCAGGATTCGTAATCTTCATCCAGCTGTGGTGCACTGAT GAAAAAGGACCAGTCTTCGTTACCATTTTCGGTCCTCTTACGACAGTCCTAGTCGTCATTCTGTCTTACTTTATCATGGACGAAAACCTCTACTTGGGAA GTATCGTAGGGGCAGCCATCGTCATGGTTGGCTTATATTTACTGCTATGGGGAAAAGAAAGCGATGGGAAAGCTGAAATCGAACTTGAAGAAGAAACTCT TCCATCTAACACAGATGTCATAGATGCCAAGATACACGTAGACGCAGAAAAGTCAACAACAAGGGCCAGTGTAAAAGATGAAACCGATTAA
AA sequence Show only first row Show all	>Lus10021200 pacid=23171399 polypeptide=Lus10021200 locus=Lus10021200.g ID=Lus10021200.BGIv1.0 annot-version=v1.0 MESELELKRRTPVCKMLKEHVGKAGERNVQAYTVKRYPARLSSTAWMSALGTVQSAVFTINVQHKKAAWIVGFNIDLWSIIYGGVVISGFVIFIQLWCTD EKGPVFVTIFGPLTTVLVVILSYFIMDENLYLGSIVGAAIVMVGLYLLLWGKESDGKAEIELEEETLPSNTDVIDAKIHVDAEKSTTRASVKDETD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10021200 [exp]	0	1
					Lus10036784 [exp]	1.4	0.9247
AT5G44440			FAD-binding Berberine family p...		Lus10003646 [exp]	2.2	0.8530
					Lus10020274 [exp]	2.4	0.9213
AT5G16380			Protein of unknown function, D...		Lus10026841 [exp]	4.2	0.7664
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Lus10010974 [exp]	4.2	0.8971
AT1G06240			Protein of unknown function DU...		Lus10017666 [exp]	5.4	0.7542
					Lus10025483 [exp]	5.7	0.8690
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10037470 [exp]	6.3	0.8210
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023363 [exp]	10.0	0.8003
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10033333 [exp]	10.2	0.7632

Compare expression of checked genes

Lus10021200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.