Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39510 179 / 1e-53 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 174 / 7e-52 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G44800 170 / 4e-50 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 155 / 2e-44 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 151 / 1e-42 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G43650 149 / 2e-42 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G53210 144 / 3e-40 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 142 / 3e-39 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 128 / 3e-34 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G30420 128 / 4e-34 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022187 [exp] 391 / 2e-136 AT4G08300 270 / 7e-88 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005964 [exp] 163 / 4e-47 AT2G39510 433 / 7e-152 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 162 / 1e-46 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029464 [exp] 159 / 2e-45 AT2G39510 429 / 2e-150 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020817 [exp] 154 / 1e-43 AT1G25270 274 / 8e-90 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 151 / 7e-43 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10021200 [exp] 145 / 2e-42 AT3G18200 119 / 5e-33 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10025308 [exp] 150 / 1e-40 AT2G37460 487 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 145 / 3e-40 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G165600 [exp] 377 / 4e-131 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 289 / 2e-96 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 181 / 3e-54 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 176 / 4e-52 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G042900 [exp] 172 / 9e-51 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.001G108600 [exp] 170 / 6e-50 AT1G25270 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G307900 [exp] 166 / 9e-49 AT1G25270 254 / 2e-82 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 165 / 5e-48 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.008G051400 [exp] 159 / 5e-46 AT5G13670 405 / 4e-141 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 157 / 5e-45 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10021201 pacid=23171400 polypeptide=Lus10021201 locus=Lus10021201.g ID=Lus10021201.BGIv1.0 annot-version=v1.0 ATGAAAGGTGGTGCTTGTAAGTTTGGAGACACTTGTAGAAAGTTTAGACCACACTTGATCATGGTTCTGGCACAGCTTTGCTATACTTTTCTCTACTCCA TCACCGAAGCTTCCTTCAAACATGGCATGAATCCTAATGTTTACATAACTTATCGTCACGTCGTCTCAGCTGCGGTCATGTTCCCTATTGCCTATTTCAT TGAAAGAAAACAAAGACCCAAAATGACATTTTCCCTTTTCATCGAAATCTTCCTTCTGACTCTCCTAGGGGTGGGTTTGACTTTGAACATGTACTTTGTG AGTTTAACATACACTTCTCCAACTTTTGTTGCTTCTATGGTGAATACCATAGCTTCCTTGACATTTGTGATTGCAGTTATACTAAGGTTGGAGACACTTG ACCTTCGGAATCCTCGAGGAGTGGCGAAAATTCTAGGGACATTGATTTCTTTGTCTGGCGTTAACATTGAAGAGATATCCTGCTCAGTTGTCACTAACAG CTTGGATGAGCGCTGTGGGAGCTGTTCAGTCAGCTGTCTTCACAGTTACTATAGAGCAAACAAGTCTGATTGGACAATTGGTTTCAATGTAGATTTCTGG TCTACCGTCTACAGTGGAGTGGTGATCTCAGGAATGGTGGTCTTCATTCAGCTGTGGTGCACAGAACAAAAAGGGCCTGTCTTTGTGACCACCTTCAACC CTCTTTCCACAATTCTAGTGGCACTTCTGGCTTACTTCATTGTGGGAGAAAAACTTTACTTGGGAAGTATCATAGGAGCTGTAGTTCTGATTGTTGGATT ATATTCACTTCTCTGGGGGAAAGAAGCAGATCAACAGCCTAGTAAGAAATCTGAACATCAAACTGTTTCAGGAGCTTACAGTGAGGGAAAGGAAACTACT GACATACAGATAAGTACTTCAGCTGTATCTAAGGTTTAG
AA sequence Show only first row Show all	>Lus10021201 pacid=23171400 polypeptide=Lus10021201 locus=Lus10021201.g ID=Lus10021201.BGIv1.0 annot-version=v1.0 MKGGACKFGDTCRKFRPHLIMVLAQLCYTFLYSITEASFKHGMNPNVYITYRHVVSAAVMFPIAYFIERKQRPKMTFSLFIEIFLLTLLGVGLTLNMYFV SLTYTSPTFVASMVNTIASLTFVIAVILRLETLDLRNPRGVAKILGTLISLSGVNIEEISCSVVTNSLDERCGSCSVSCLHSYYRANKSDWTIGFNVDFW STVYSGVVISGMVVFIQLWCTEQKGPVFVTTFNPLSTILVALLAYFIVGEKLYLGSIIGAVVLIVGLYSLLWGKEADQQPSKKSEHQTVSGAYSEGKETT DIQISTSAVSKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21890			nodulin MtN21 /EamA-like trans...		Lus10021201 [exp]	0	1
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030590 [exp]	2.0	0.9366
AT4G38960	CO		B-box type zinc finger family ...		Lus10035472 [exp]	3.6	0.8987
AT3G14280			unknown protein		Lus10003937 [exp]	3.7	0.9083
AT4G31830			unknown protein		Lus10010682 [exp]	9.8	0.9156
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10012039 [exp]	10.8	0.8745
AT5G01750			Protein of unknown function (D...		Lus10022754 [exp]	12.4	0.8763
AT4G21340	bHLH	bHLH103, B70	basic helix-loop-helix (bHLH) ...		Lus10005959 [exp]	12.7	0.8875
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Lus10006489 [exp]	13.0	0.8793
AT3G30390			Transmembrane amino acid trans...		Lus10005099 [exp]	14.6	0.8579
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10039640 [exp]	15.5	0.8859

Compare expression of checked genes

Lus10021201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.