Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 160 / 8e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G23200 146 / 7e-42 Uncharacterised protein family (UPF0497) (.1) AT1G06640 146 / 2e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT1G06650 147 / 3e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G30840 142 / 7e-38 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59530 140 / 3e-37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G25450 139 / 5e-37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G03410 135 / 4e-35 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 131 / 7e-35 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G30830 127 / 8e-33 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022189 [exp] 307 / 4e-101 AT1G06620 418 / 3e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022188 [exp] 192 / 2e-59 AT3G23200 206 / 3e-69 Uncharacterised protein family (UPF0497) (.1) Lus10023499 [exp] 143 / 4e-38 AT1G06620 400 / 2e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022190 [exp] 140 / 1e-37 AT1G06620 323 / 6e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10040382 [exp] 140 / 4e-37 AT1G06620 411 / 2e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022193 [exp] 138 / 2e-36 AT1G06620 455 / 1e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10040380 [exp] 138 / 2e-36 AT1G06620 387 / 4e-134 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027586 [exp] 137 / 6e-36 AT1G06620 449 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002894 [exp] 132 / 2e-33 AT1G06620 369 / 2e-125 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G165500 [exp] 172 / 7e-52 AT3G23200 174 / 1e-56 Uncharacterised protein family (UPF0497) (.1) Potri.010G073000 [exp] 165 / 5e-49 AT3G23200 182 / 7e-60 Uncharacterised protein family (UPF0497) (.1) Potri.008G165400 [exp] 169 / 4e-48 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 167 / 2e-47 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073300 [exp] 140 / 2e-37 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 139 / 7e-37 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 129 / 4e-33 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G090400 [exp] 115 / 2e-30 AT3G53850 193 / 5e-64 Uncharacterised protein family (UPF0497) (.1) Potri.010G107500 [exp] 118 / 6e-29 AT1G03400 302 / 3e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 112 / 4e-27 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10021202 pacid=23171388 polypeptide=Lus10021202 locus=Lus10021202.g ID=Lus10021202.BGIv1.0 annot-version=v1.0 ATGGGAACCGAACCCGCCGCTTTCGATCGGAACATCGCACTCAAGGCCTTCCACAACACCAAAGCAGGGGTCAAGTGCCTCGTTGACGCTCAAGTTTCAC AAATTCCCACCATATTTCTTCACTCTCAGTCCAACACAGCTTCCCTCGCCAAGACAACTCCAGAAGACTCTTTACCGCCGGACGCCGCCATTCCGACTAT TGACTTGAAGGGTATCGACCAAGACCTAGATCTCCGCCGCCGAGTAATCGGCCTGATATTGGACGCTTGCCGAAGCCGAGGATTCTTCCAGGTGATCAAT CATGGAATCCCCATAACCCTCATGGATAAGATGCTTGACGGAGTTAGGGATTTCCACGAACAAGACACTCAAGCGCCGGCGGCTAATTGGAGGGATACCA TGAGTTGTGTCATGGCACCCCGCCCTCCAAACCCTGAAGAACTCCCCCAAGTTTGCAGGGAGGTAATGGTTGACTACTGCAACCAAGGGATGAAATTGAC AACCGAGTTGTTTGAATTGCTGTTTGAAGCATTAGGACTGGATCCCATTGGTTGCTCGGGAGGGCTGTTCTTTTGGGGCATTACTACCCGGCTTTTAATT TCCAATGACATATTCAAGAGCTCCCAGCACAGAGTGGTTGCGAAGTCCATAGGTCCCCGAATTTCGGTGGCTTGTTTTCTAAGACAGCAGCTGCCTCCTG AGAATGCTTCGAGGATTTACGGTCCGATTAAGGAGGTGTTGTCGGAAGAAAATCCCCCAGTTTACAGGGGAGTAACCGTGAAGGAGTTTGTGGCACATTA CTATGAAAAAGGGCTTAATGGAGTCTCCGGTCTGGAGCATTTCAGAGCTGCTAAAACACAGACGCCAGGTACCCCAGGAATGAGGGATTTTGCTGGAACT CCGGGGACACTGACCGCCCTTTTCCTCCGGATATCTCAATCTGTTTTCGCTGCTGCCTCAATTACTGCCATGTCCACCACTTCCAACTTCTTCAGTTTCA CTGCTTTCTGCTACTTAATCGCATCAATGGGTTTGCAAGTGATCTGGAGCTTTGGACTTGCACTATTAGATGCATATGCCTTGCTGAGAGGGAAAATGCT GCACAACTCTCTATTGGTCAGCCTATTTGCAGTGGGAGATTGGTTCATTTGTAAACTGCATGTAAGCCTGCTCCTCGTTTGTTGCCACCAGCTAACACAT TGCCAACAGGTGACAGCAACCTTGTCTCTTGCTGCGGCTTCCGCTTCTGCGGGCATCGCCGTACTTCTTTTTCATGACTTGGGACATTGCGCTCTTGTAG GGGAATGTCAAAAGTACCAAATGGCAGTTGGGTTGGCGTTTCTTAGCTGGGTCACTGTGGCAATATCTTCAATCATAATGCTTTGGTTAATGGCTCAAGG TTAG
AA sequence Show only first row Show all	>Lus10021202 pacid=23171388 polypeptide=Lus10021202 locus=Lus10021202.g ID=Lus10021202.BGIv1.0 annot-version=v1.0 MGTEPAAFDRNIALKAFHNTKAGVKCLVDAQVSQIPTIFLHSQSNTASLAKTTPEDSLPPDAAIPTIDLKGIDQDLDLRRRVIGLILDACRSRGFFQVIN HGIPITLMDKMLDGVRDFHEQDTQAPAANWRDTMSCVMAPRPPNPEELPQVCREVMVDYCNQGMKLTTELFELLFEALGLDPIGCSGGLFFWGITTRLLI SNDIFKSSQHRVVAKSIGPRISVACFLRQQLPPENASRIYGPIKEVLSEENPPVYRGVTVKEFVAHYYEKGLNGVSGLEHFRAAKTQTPGTPGMRDFAGT PGTLTALFLRISQSVFAAASITAMSTTSNFFSFTAFCYLIASMGLQVIWSFGLALLDAYALLRGKMLHNSLLVSLFAVGDWFICKLHVSLLLVCCHQLTH CQQVTATLSLAAASASAGIAVLLFHDLGHCALVGECQKYQMAVGLAFLSWVTVAISSIIMLWLMAQG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021202 [exp]	0	1
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10013027 [exp]	2.4	0.8803
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10010633 [exp]	4.2	0.8637
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10041366 [exp]	5.8	0.8680
AT4G27270			Quinone reductase family prote...		Lus10020076 [exp]	6.3	0.8609
AT3G47160			RING/U-box superfamily protein...		Lus10006447 [exp]	8.9	0.8609
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10033192 [exp]	10.2	0.8454
AT4G19670			RING/U-box superfamily protein...		Lus10018293 [exp]	10.8	0.8388
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10028937 [exp]	13.0	0.8275
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10025728 [exp]	13.3	0.8159
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10014715 [exp]	13.6	0.8566

Compare expression of checked genes

Lus10021202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.