Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59530 398 / 2e-138 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06620 397 / 3e-138 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 396 / 1e-137 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 389 / 5e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G30840 388 / 1e-134 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 382 / 2e-132 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 382 / 6e-132 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT1G06650 381 / 1e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06645 366 / 6e-126 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43440 358 / 1e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022196 [exp] 660 / 0 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 543 / 0 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022415 [exp] 540 / 0 AT1G06620 432 / 6e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 535 / 0 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 449 / 2e-158 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 449 / 4e-158 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022193 [exp] 448 / 4e-158 AT1G06620 455 / 1e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027586 [exp] 442 / 1e-155 AT1G06620 449 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037796 [exp] 439 / 2e-154 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073300 [exp] 433 / 4e-152 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 426 / 3e-149 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 415 / 4e-145 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 384 / 5e-133 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G165400 [exp] 370 / 4e-127 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 360 / 1e-123 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.013G045000 [exp] 335 / 9e-114 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 328 / 2e-110 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 312 / 2e-104 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 298 / 4e-99 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10021203 pacid=23171392 polypeptide=Lus10021203 locus=Lus10021203.g ID=Lus10021203.BGIv1.0 annot-version=v1.0 ATGGAAGATGCAGCTCACGACAGGCTTTCCGAATTGAAGGCTTTCGACGAGACAAAAGCCGGAGTGAAGGGCCTCTCTGACGCCGGAGTTACACTTCTTC CTCGCATCTTCAAGGCACCCCTTCATCTGCTAGACAACACTCCGCCGACATTTTCACCCGACGACCCGGACTTCATTTTCCCCGTCATAGATTTGGAAGG GGCTGCACAAGATGATCCTTACAAGCGTAAGCAGATTGTTGACCAAGTGAGGGACGCGTCTTCCAATTGGGGATTCTTCCAAGTGATGAATCATGGAATT CCAGATCGCGTTTTGGAGGAAATGAAAGCTGGGGTTCGAAGGTTCCACGAGCAGGACGTGGAGGCGAAGAAGGAATTCTATACCCGTGACGTCGTCGGCA AGAAGATTGTTTACAACTGCAACTTCGATCTCTACACCGGATCTTTTACCAACTGGAGGGACACTGTCCTATTTCGTATGGCTCCAGATCCTCCCTCCCC TCACCAGTTTCCGCCTTGTTGCAGAGAAATCCTGCTTGAATATTCAAAGCAAGTGCAGAAACTGGGAGACTTGCTTCTCCAATTGATATCAGAGGCATTG GGTCTGGCGTCTACTCGCCTAAAGGAACTAGAATGCACAAAGGGACTTAATGTGATATGTCACTACTATCCACCATGTCCACAGCCAGAACTTACAATGG GGACTGGCAGGCATGCCGACGATGACTTCGTAACGGTGCTTCTCCAAGACCATAGTGGAGGCCTCCAAGTCCTTCATAAGGGCCAATGGGTTGATGTGTC TCCTTTGCCTGGTGCTTTGGTTATCAATCTTGGAGATCTACTCCAGCTAATTTCGAATGACAAATTTATAAGTGCGGAGCATAGAGTGCTAGCGCAAAAT ACTGGGCCAAGAATATCCATTGCGTCGTTCGTGCACACTCCGTTCACACCATTGCCAGTCAACTATGGCCCCATTGTAGAGTTGTTATCAGAAAATGAAC CACCAAAATATAGGCACACTACAGCGGCAGAATTTAATGCTCATTACTTTAGTAAAGGCCTTAACGGGACTTCTGCTTTGGCTCATTTCAAGCTCTAA
AA sequence Show only first row Show all	>Lus10021203 pacid=23171392 polypeptide=Lus10021203 locus=Lus10021203.g ID=Lus10021203.BGIv1.0 annot-version=v1.0 MEDAAHDRLSELKAFDETKAGVKGLSDAGVTLLPRIFKAPLHLLDNTPPTFSPDDPDFIFPVIDLEGAAQDDPYKRKQIVDQVRDASSNWGFFQVMNHGI PDRVLEEMKAGVRRFHEQDVEAKKEFYTRDVVGKKIVYNCNFDLYTGSFTNWRDTVLFRMAPDPPSPHQFPPCCREILLEYSKQVQKLGDLLLQLISEAL GLASTRLKELECTKGLNVICHYYPPCPQPELTMGTGRHADDDFVTVLLQDHSGGLQVLHKGQWVDVSPLPGALVINLGDLLQLISNDKFISAEHRVLAQN TGPRISIASFVHTPFTPLPVNYGPIVELLSENEPPKYRHTTAAEFNAHYFSKGLNGTSALAHFKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021203 [exp]	0	1
AT4G12010			Disease resistance protein (TI...		Lus10008320 [exp]	5.0	0.7011
AT3G14460			LRR and NB-ARC domains-contain...		Lus10029705 [exp]	10.0	0.7571
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10014992 [exp]	29.5	0.7486
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10031052 [exp]	31.6	0.7326
AT1G52540			Protein kinase superfamily pro...		Lus10019988 [exp]	34.1	0.6481
AT1G75450		ATCKX6, ATCKX5,...	CYTOKININ OXIDASE 6, ARABIDOPS...		Lus10024289 [exp]	34.5	0.6881
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10034623 [exp]	35.5	0.7054
					Lus10022267 [exp]	35.9	0.7143
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Lus10026608 [exp]	37.5	0.6477
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10024706 [exp]	38.7	0.6878

Compare expression of checked genes

Lus10021203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.