Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59530 184 / 4e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06620 181 / 1e-54 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 172 / 4e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G04380 170 / 9e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43440 169 / 3e-50 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G43450 169 / 4e-50 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 165 / 1e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 165 / 1e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 162 / 2e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06640 161 / 6e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022197 [exp] 263 / 9e-87 AT1G06620 434 / 6e-153 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10041230 [exp] 191 / 3e-60 AT5G59530 270 / 1e-90 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021203 [exp] 194 / 7e-60 AT1G06620 416 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 194 / 9e-60 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022196 [exp] 194 / 1e-59 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017080 [exp] 191 / 2e-58 AT1G06620 440 / 3e-155 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037796 [exp] 189 / 1e-57 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 187 / 4e-57 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022415 [exp] 185 / 3e-56 AT1G06620 432 / 6e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073232 [exp] 201 / 1e-62 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 195 / 5e-60 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 191 / 1e-58 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 173 / 9e-52 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G165400 [exp] 171 / 5e-51 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.013G045000 [exp] 170 / 2e-50 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 169 / 3e-50 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.017G135800 [exp] 140 / 7e-39 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G136000 [exp] 136 / 1e-37 AT1G06620 314 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 133 / 2e-36 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10021204 pacid=23171373 polypeptide=Lus10021204 locus=Lus10021204.g ID=Lus10021204.BGIv1.0 annot-version=v1.0 ATGGCTCCGCATCCTCCTCAACCTCATGAATTGCCCGCTTGCTGCAGGGATATCTTGATCAGTTACTCTAGCGAAATGCTGAAATTGGGTGATCTACTCT TGGAACTGTTGTCTGAGGCTCTAGGTTTAACCCCAAATCATTTGAAAGAAATGGATTGTTCAAATGGGCTATGTGTATTGTGCCATTACCATCCACCTTG TCCTCAACCAGAGCTCACTCTGGGTTCATCCAAGCATCAAGATGATGATTTCATAACAGTGCTTATACAAGATGACATCGGAGGCCTTCAAGTTCTTCAC CTGGATCAATGGGTTGATGTACCTCCCTTGCCAGGGAGTCTGGTGGTCAACATTGGAGACTTGCTTCAGCTTCTGTCGAATGACAAGTTCATAAGCGCCG AGCATCGTGCTCTGGTTAAAAGCAAAGGACCTCGAGTCTCAGTGGGTCATTTTTCACTCATGGGTTTTCACCCAATCCTCGAATGTATGGGCCTATCAAG GAGCTCTTGTCAGAAGACAATCCGCCAAAGTACAGGGAAGTCTCAATTCAGGAGTTTACTTCCCACATATATGATAACGGCCTCGGCGGAGCTTCTGCTC TGCATCGTCTTAAGTTATGAATATTTGAATTTTGCCGTGGAATCGTACGTTTTAAGCCATCACCATGAGATTGTCGAACCAACTGATGCTTTCGACCTAA CCAAAGCCGGAGTGAAAGGGCTTCTGGATTCTGGAATCACTGAGCTCCCTCGTATCTTTCATGCCCCGCATCATCTCCTCCATGACAGACCAGTCGCTCC AACCGACGATCCCAACTTCATTTTGCCAATCATAGACCTGGAAGGGTGA
AA sequence Show only first row Show all	>Lus10021204 pacid=23171373 polypeptide=Lus10021204 locus=Lus10021204.g ID=Lus10021204.BGIv1.0 annot-version=v1.0 MAPHPPQPHELPACCRDILISYSSEMLKLGDLLLELLSEALGLTPNHLKEMDCSNGLCVLCHYHPPCPQPELTLGSSKHQDDDFITVLIQDDIGGLQVLH LDQWVDVPPLPGSLVVNIGDLLQLLSNDKFISAEHRALVKSKGPRVSVGHFSLMGFHPILECMGLSRSSCQKTIRQSTGKSQFRSLLPTYMITASAELLL CIVLSYEYLNFAVESYVLSHHHEIVEPTDAFDLTKAGVKGLLDSGITELPRIFHAPHHLLHDRPVAPTDDPNFILPIIDLEG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10021204 [exp]	0	1
AT4G00950		MEE47	maternal effect embryo arrest ...		Lus10030238 [exp]	6.7	0.6716
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10035596 [exp]	11.9	0.6348
AT5G18420			unknown protein		Lus10027578 [exp]	41.5	0.6176
AT4G02485			2-oxoglutarate (2OG) and Fe(II...		Lus10037635 [exp]	55.5	0.6159
AT1G53490			RING/U-box superfamily protein...		Lus10005260 [exp]	56.8	0.5780
AT3G57080		RPB5B, NRPE5	RNA POLYMERASE II FIFTH LARGES...		Lus10042019 [exp]	78.7	0.5306
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10037913 [exp]	99.8	0.5604
AT5G61220			LYR family of Fe/S cluster bio...		Lus10003467 [exp]	101.2	0.5674
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10003256 [exp]	104.4	0.5615
AT2G04740			ankyrin repeat family protein ...		Lus10012362 [exp]	124.7	0.5567

Compare expression of checked genes

Lus10021204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.