Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04340 108 / 2e-30 HR-like lesion-inducing protein-related (.1) AT5G43460 107 / 5e-30 HR-like lesion-inducing protein-related (.1) AT4G14420 73 / 1e-16 HR-like lesion-inducing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022198 [exp] 125 / 5e-34 AT5G43500 685 / 0.0 actin-related protein 9 (.1.2) Lus10041152 [exp] 116 / 7e-34 AT5G43460 144 / 5e-45 HR-like lesion-inducing protein-related (.1) Lus10041149 [exp] 82 / 2e-20 AT4G14420 187 / 7e-62 HR-like lesion-inducing protein-related (.1) Lus10021877 [exp] 82 / 2e-20 AT4G14420 189 / 1e-62 HR-like lesion-inducing protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G165100 [exp] 139 / 1e-42 AT1G04340 172 / 6e-56 HR-like lesion-inducing protein-related (.1) Potri.010G073500 [exp] 138 / 3e-42 AT5G43460 149 / 8e-47 HR-like lesion-inducing protein-related (.1) Potri.008G165200 [exp] 100 / 3e-27 AT4G14420 182 / 8e-60 HR-like lesion-inducing protein-related (.1) Potri.005G222200 [exp] 100 / 4e-27 AT4G14420 159 / 1e-50 HR-like lesion-inducing protein-related (.1) Potri.010G073400 [exp] 94 / 4e-25 AT4G14420 170 / 8e-55 HR-like lesion-inducing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0131 [flax] [poplar] DoxD-like PF05514 [flax] [poplar] HR_lesion HR-like lesion-inducing
Representative CDS sequence Show only first row Show all	>Lus10021205 pacid=23171391 polypeptide=Lus10021205 locus=Lus10021205.g ID=Lus10021205.BGIv1.0 annot-version=v1.0 ATGGGCTTCTTTTCTTTCCTCGGCAGAGTCCTCTTCTCCTCCCTCTTCATCCTCTCCGCCTGGCAAATGTTCAATGAGTTTGGGGATGATGGTGGCCCTG CTGCCCAAGAGATCATGTCAAAGCTTTATATGGTTAAGGATCATCTTGCAACTGCATTTGCAGTCCAAATGCCGCATGTTGATGCTAGGCACCTTGTTGC CTTAAACATTGGCCTCAAGGGTCTGGGTGGCTTCCTCTTTGTGTTTGGCACTCCTTTTGGTGCTTATCTCCTGCTCCTCTACTTGGCTGTGAATGCTCCA CTCCTGTATGACTTTTACAACTATCGACGGGGCGAGATTGAGTACTTGACTCTCTTGAATGAATTCTTGCAGAGTGTTGCTCTTTTCGGTGCATTGCTTT TCTTCCTGGGGATGAAGAACCTGATTCCAAGGAGACAGATGAAGAAGAAGGCTGCTTCCAAAACCAAAGTTGGTTAG
AA sequence Show only first row Show all	>Lus10021205 pacid=23171391 polypeptide=Lus10021205 locus=Lus10021205.g ID=Lus10021205.BGIv1.0 annot-version=v1.0 MGFFSFLGRVLFSSLFILSAWQMFNEFGDDGGPAAQEIMSKLYMVKDHLATAFAVQMPHVDARHLVALNIGLKGLGGFLFVFGTPFGAYLLLLYLAVNAP LLYDFYNYRRGEIEYLTLLNEFLQSVALFGALLFFLGMKNLIPRRQMKKKAASKTKVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04340			HR-like lesion-inducing protei...		Lus10021205 [exp]	0	1
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10018639 [exp]	4.9	0.9488
AT1G27090			glycine-rich protein (.1)		Lus10037224 [exp]	5.3	0.9508
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10010429 [exp]	6.2	0.9517
AT5G40490			RNA-binding (RRM/RBD/RNP motif...		Lus10014562 [exp]	6.6	0.9347
AT5G50740			Heavy metal transport/detoxifi...		Lus10030514 [exp]	6.9	0.9474
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10015597 [exp]	9.7	0.9467
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10000872 [exp]	10.1	0.9459
AT1G32580			plastid developmental protein ...		Lus10011789 [exp]	10.4	0.9287
					Lus10041954 [exp]	12.0	0.9172
AT2G40800			unknown protein		Lus10030504 [exp]	12.4	0.9410

Compare expression of checked genes

Lus10021205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.