Plant FIBer expression Database

Lus10021206 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G43500 118 / 7e-31 ATARP9 actin-related protein 9 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022198
[exp]
213 / 6e-65 AT5G43500 685 / 0.0 actin-related protein 9 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G073600
[exp]
179 / 6e-53 AT5G43500 773 / 0.0 actin-related protein 9 (.1.2)
Potri.008G165000
[exp]
174 / 3e-51 AT5G43500 773 / 0.0 actin-related protein 9 (.1.2)
PFAM info
Representative CDS sequence
>Lus10021206 pacid=23171362 polypeptide=Lus10021206 locus=Lus10021206.g ID=Lus10021206.BGIv1.0 annot-version=v1.0
ATGGCGCAGGATTACTTGAAAACCGTGGTTCCGTCGCAACTAGTTGCCGATCGAGGTTCTAATATAGTCGTTATCAACCCTGGTTCTGCCAACGTTCTAA
TTGGAACCGCTCAACAGGATGCTCCCTACTCCAGTCTTCACTGCATTGCTCGTCATACCAATCAAACACCCAAGTTGAATGTTCTAGATCAGCCGATGCT
AAATTGTCAGGTGACGAATGGTCAGCACATGGAGCGTGAGAAGGCTTATGATGCTGAGGGGGAGCTTGATGTTGTTTCCATAGTTCATTCCTACGAGGAC
GGCCTGGCACCTGGATCTCTTAAGGCTAGGTTAACTGCTCTTAATGTACCTCCAATGGGGCTTTTCTATCCTACGCTTTTGGTTTCAGATGTGTATCCTC
CCCCACCTCGTTCTTGGTTTAATAACTACGATGACATGCTGGAAGAGACATGGCATATAGAATATCCCAGAAGGCCTGACATATCTAATAGTATGTATCC
TGGCGTGAACGTTGGATTACCCTTGTGGGACAACTACCCGATATTTGCCTCTAAGCCAAAAAGGAAGAAAAAGTCGGTCTTGCAGAAGCTATCACCGATA
GTATTCTCTGAAGTGGTAAGACTCGCATAA
AA sequence
>Lus10021206 pacid=23171362 polypeptide=Lus10021206 locus=Lus10021206.g ID=Lus10021206.BGIv1.0 annot-version=v1.0
MAQDYLKTVVPSQLVADRGSNIVVINPGSANVLIGTAQQDAPYSSLHCIARHTNQTPKLNVLDQPMLNCQVTNGQHMEREKAYDAEGELDVVSIVHSYED
GLAPGSLKARLTALNVPPMGLFYPTLLVSDVYPPPPRSWFNNYDDMLEETWHIEYPRRPDISNSMYPGVNVGLPLWDNYPIFASKPKRKKKSVLQKLSPI
VFSEVVRLA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G43500 ATARP9 actin-related protein 9 (.1.2) Lus10021206
[exp]
0 1
AT1G31720 Protein of unknown function (D... Lus10034746
[exp]
2.4 0.9057
AT5G05320 FAD/NAD(P)-binding oxidoreduct... Lus10019728
[exp]
3.5 0.8920
AT1G48820 Terpenoid cyclases/Protein pre... Lus10008613
[exp]
3.9 0.8875
Lus10040440
[exp]
6.2 0.8675
AT2G15220 Plant basic secretory protein ... Lus10019804
[exp]
7.9 0.8757
AT5G46030 unknown protein Lus10014995
[exp]
11.5 0.8696
AT2G27410 B3 Domain of unknown function (DU... Lus10027286
[exp]
12.3 0.8962
AT1G77760 GNR1, NIA1 nitrate reductase 1 (.1) Lus10031005
[exp]
13.2 0.7976
AT3G13200 EMB2769 EMBRYO DEFECTIVE 2769, Cwf15 /... Lus10018143
[exp]
14.1 0.8295
AT2G24840 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) Lus10030663
[exp]
16.7 0.8729

Lus10021206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.