Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14430 286 / 4e-98 PEC12, IBR10, ECHIB, ATECI2 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) AT4G14440 261 / 2e-88 HCD1, ATECI3 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, 3-hydroxyacyl-CoA dehydratase 1 (.1) AT1G65520 177 / 4e-55 PEC11, ECHIC, ATECI1 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022199 [exp] 417 / 6e-150 AT4G14430 310 / 2e-107 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Lus10041154 [exp] 336 / 9e-118 AT4G14440 306 / 5e-106 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, 3-hydroxyacyl-CoA dehydratase 1 (.1) Lus10041153 [exp] 309 / 5e-107 AT4G14440 306 / 4e-106 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, 3-hydroxyacyl-CoA dehydratase 1 (.1) Lus10005159 [exp] 180 / 4e-56 AT1G65520 279 / 4e-95 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) Lus10001701 [exp] 174 / 5e-54 AT1G65520 270 / 5e-92 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) Lus10005158 [exp] 85 / 9e-21 AT1G65520 140 / 1e-42 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073700 [exp] 291 / 5e-100 AT4G14430 293 / 5e-101 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Potri.008G164900 [exp] 283 / 4e-97 AT4G14430 280 / 1e-95 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Potri.010G207800 [exp] 184 / 4e-58 AT1G65520 276 / 3e-94 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) Potri.008G052801 [exp] 69 / 1e-14 AT1G65520 140 / 3e-42 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10021207 pacid=23171396 polypeptide=Lus10021207 locus=Lus10021207.g ID=Lus10021207.BGIv1.0 annot-version=v1.0 ATGTGTTCGTTAGAGAAGCGTGGCGATTTCTTCATCCTCACGTTGACCGGCGACGGCAGCGACGAGCACCGTCTCAGCCCTGCGCTAATCTCCTCCCTTC TGTCGGCTCTCCGCGAAGTCAAGTCACAGGCCACTCGAGGATCGGTCCTCGTCACCACATCGCAAGGCAAATTCTTCTCCAACGGATTCGATCTCGCCTG GGCCACATCTGCCAGATCCAGGTCCAAGGCCGCCGAGCGTCTCCATCAAATGGTCGATTCCTTCCGGCCGATCGTGGCGGAGCTGATCTCCCTCCCGATG CCCACCGTCGCCGTAGTCCAGGGCCACGCAGCTGCTGCCGGATTCTCGCTCGCCCTGAGCCACGATTACGTGTTTATGAGGAGTGACAAGGGTGTTCTGT ACATGAGTGAGGTAGATTTGGGGCTGCCATTCCCGGACTACTTCACCGTTCTGTTCCGGGGCAAGCTCGGGTCGGTTGCGGCGCGGCGGGACGTGCTGCT AGGAGGGAAGAAGGTGAGGGGAGCGGAGGCGTTGAGGTTAGGGATCGTGGACGGGGCGCAAGATAGCGAGGAGAAGTTGAAGGATACGGGAATGCGCTTA GCGGAGCAGCTGGCAGGGAGGAAGTGGGATGGCGAGGTTTACAAGGAGATTAGGAAGAGTTTGTATCCTGAGCTCTGTGGCATCCTGGGATTGGAAGTTA CCAGCCCTGTCCTCTCAAAGCTCTGA
AA sequence Show only first row Show all	>Lus10021207 pacid=23171396 polypeptide=Lus10021207 locus=Lus10021207.g ID=Lus10021207.BGIv1.0 annot-version=v1.0 MCSLEKRGDFFILTLTGDGSDEHRLSPALISSLLSALREVKSQATRGSVLVTTSQGKFFSNGFDLAWATSARSRSKAAERLHQMVDSFRPIVAELISLPM PTVAVVQGHAAAAGFSLALSHDYVFMRSDKGVLYMSEVDLGLPFPDYFTVLFRGKLGSVAARRDVLLGGKKVRGAEALRLGIVDGAQDSEEKLKDTGMRL AEQLAGRKWDGEVYKEIRKSLYPELCGILGLEVTSPVLSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10021207 [exp]	0	1
AT1G12440			A20/AN1-like zinc finger famil...		Lus10008912 [exp]	2.0	0.9292
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10022199 [exp]	2.2	0.9171
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10023672 [exp]	2.8	0.9187
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Lus10027797 [exp]	4.6	0.8779
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10014994 [exp]	6.0	0.8936
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10023392 [exp]	7.4	0.8890
AT2G01410			NHL domain-containing protein ...		Lus10031240 [exp]	7.5	0.8816
AT3G30390			Transmembrane amino acid trans...		Lus10035140 [exp]	8.0	0.9289
AT1G48300			unknown protein		Lus10038034 [exp]	14.6	0.9200
AT3G10470	C2H2ZnF		C2H2-type zinc finger family p...		Lus10021409 [exp]	16.7	0.8531

Compare expression of checked genes

Lus10021207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.