Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23400 274 / 5e-92 FIB4 fibrillin 4, Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT5G09820 45 / 2e-05 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011803 [exp] 389 / 3e-137 AT3G23400 307 / 5e-105 fibrillin 4, Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10020860 [exp] 41 / 0.0004 AT5G09820 269 / 5e-91 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Lus10033514 [exp] 41 / 0.0005 AT5G09820 270 / 3e-91 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G169100 [exp] 296 / 8e-101 AT3G23400 267 / 2e-89 fibrillin 4, Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G309300 [exp] 51 / 3e-07 AT5G09820 268 / 7e-90 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Potri.003G020700 [exp] 45 / 2e-05 AT3G26070 244 / 6e-81 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [flax] [poplar] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Lus10021209 pacid=23171386 polypeptide=Lus10021209 locus=Lus10021209.g ID=Lus10021209.BGIv1.0 annot-version=v1.0 ATGGCTTCCCTTAGCTCATTCTCTCCCTACCCTCCTTCTACGACGCTCTGCTCCTGCTCTTACTCTATTACTCCCCTCCCCGCCGGGATTTCAATCGAAG CGAATCGAGTTCCTGATAAACATCCAAACAACCTATGTCTTCTCGCCGTTGGTTCTAGGATTAGGAATAGGAGGAGGAGCACCAGCTTCGCGGTCCTTGA TGACACCTACATCCTCGACCCACCGCCGCCGCCACCTCTGCCTCCTGCTGACCGTGTTTACTCTTTGAAGCTCAAACTGCTGAGTGTGGTTTCTGGGCTG AACCGGGGTCTGGCTGCAACTACAGACGACCTAAAGAAGGCAGATGATGCTGCCAAGGAGCTTGAAGATGCAGGAGGAATTGTGGATCTAGCGTGTGACT TGGATAAGCTACAAGGGAGGTGGAAGTTGGTTTACAGCAGCGCCTTCTCTTCTCGAACTCTCGGTGGAAGTCGTCCCGGTATCCCTACCGGAAGGCTGTT ACCTGTCACTCTTGGCCAGGTGTTCCAACGGATCGACGTTGTCAACAGAGATTTTGACAACATAGCAGAGCTTCAATTGGGAACACCGTGGCCACTGCCA CCAGTGGATTTGACTGCAACCTTAGCCCACAAGTTTGAGCTCATAGGATCGGCCAAGATCAAAATCAACTTTGAGAAAACAACCGTGAAGACAACTGGGA ACCTGGCACAGCTTCCTCCACTTGACGTCCCAAGGTTACCGGACGGTCTGAGGCCTCCATCGAACCCAGGATCAGGGGACTTTGAGGTCACCTTCCTGGA TGCTGACACTCGGATCACAAGAGGGGATCGCGGGGAGCTCAGGGTGTTTGTCATCTCATGA
AA sequence Show only first row Show all	>Lus10021209 pacid=23171386 polypeptide=Lus10021209 locus=Lus10021209.g ID=Lus10021209.BGIv1.0 annot-version=v1.0 MASLSSFSPYPPSTTLCSCSYSITPLPAGISIEANRVPDKHPNNLCLLAVGSRIRNRRRSTSFAVLDDTYILDPPPPPPLPPADRVYSLKLKLLSVVSGL NRGLAATTDDLKKADDAAKELEDAGGIVDLACDLDKLQGRWKLVYSSAFSSRTLGGSRPGIPTGRLLPVTLGQVFQRIDVVNRDFDNIAELQLGTPWPLP PVDLTATLAHKFELIGSAKIKINFEKTTVKTTGNLAQLPPLDVPRLPDGLRPPSNPGSGDFEVTFLDADTRITRGDRGELRVFVIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23400		FIB4	fibrillin 4, Plastid-lipid ass...		Lus10021209 [exp]	0	1
AT3G23880			F-box and associated interacti...		Lus10023238 [exp]	4.6	0.8607
AT5G17400		ER-ANT1	endoplasmic reticulum-adenine ...		Lus10034658 [exp]	8.5	0.8280
AT3G49060			U-box domain-containing protei...		Lus10014772 [exp]	8.8	0.8192
AT1G71480			Nuclear transport factor 2 (NT...		Lus10041048 [exp]	8.9	0.8575
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Lus10007512 [exp]	10.0	0.8108
AT5G52190			Sugar isomerase (SIS) family p...		Lus10038873 [exp]	10.8	0.8324
AT1G20823			RING/U-box superfamily protein...		Lus10013210 [exp]	11.0	0.8011
AT4G16400			unknown protein		Lus10016614 [exp]	12.0	0.8014
AT1G80940			unknown protein		Lus10024095 [exp]	20.0	0.7819
AT4G21210		ATRP1	PPDK regulatory protein (.1.2)		Lus10006758 [exp]	20.4	0.8091

Compare expression of checked genes

Lus10021209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.