Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23160 658 / 0 Protein of unknown function (DUF668) (.1) AT5G04550 205 / 3e-58 Protein of unknown function (DUF668) (.1) AT5G51670 180 / 4e-50 Protein of unknown function (DUF668) (.1) AT1G34320 102 / 2e-22 Protein of unknown function (DUF668) (.1) AT1G30755 82 / 4e-16 Protein of unknown function (DUF668) (.1) AT5G08660 77 / 2e-14 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022201 [exp] 1092 / 0 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Lus10028839 [exp] 199 / 5e-57 AT5G04550 282 / 2e-89 Protein of unknown function (DUF668) (.1) Lus10008987 [exp] 199 / 3e-56 AT5G04550 566 / 0.0 Protein of unknown function (DUF668) (.1) Lus10031110 [exp] 148 / 2e-38 AT5G51670 454 / 8e-157 Protein of unknown function (DUF668) (.1) Lus10031691 [exp] 147 / 3e-38 AT5G51670 452 / 2e-156 Protein of unknown function (DUF668) (.1) Lus10002840 [exp] 146 / 2e-37 AT5G04550 308 / 8e-98 Protein of unknown function (DUF668) (.1) Lus10021138 [exp] 138 / 1e-34 AT5G04550 300 / 2e-94 Protein of unknown function (DUF668) (.1) Lus10006049 [exp] 98 / 4e-21 AT1G34320 919 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017260 [exp] 97 / 1e-20 AT1G30755 567 / 0.0 Protein of unknown function (DUF668) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G074000 [exp] 790 / 0 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Potri.008G164700 [exp] 778 / 0 AT3G23160 661 / 0.0 Protein of unknown function (DUF668) (.1) Potri.006G117000 [exp] 317 / 9e-101 AT5G04550 356 / 8e-116 Protein of unknown function (DUF668) (.1) Potri.008G026800 [exp] 216 / 2e-62 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.010G233700 [exp] 215 / 6e-62 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.012G129900 [exp] 202 / 2e-58 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1) Potri.015G131800 [exp] 175 / 2e-48 AT5G51670 442 / 1e-152 Protein of unknown function (DUF668) (.1) Potri.019G001500 [exp] 99 / 1e-21 AT1G34320 591 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G085900 [exp] 92 / 4e-19 AT1G34320 908 / 0.0 Protein of unknown function (DUF668) (.1) Potri.001G305800 [exp] 91 / 4e-19 AT1G34320 593 / 0.0 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11961 [flax] [poplar] DUF3475 Domain of unknown function (DUF3475) PF05003 [flax] [poplar] DUF668 Protein of unknown function (DUF668)
Representative CDS sequence Show only first row Show all	>Lus10021210 pacid=23171365 polypeptide=Lus10021210 locus=Lus10021210.g ID=Lus10021210.BGIv1.0 annot-version=v1.0 ATGGTGGCCGAGACTTGGATACTGAAGATAGGTAACCAGGTTACCACCAATTTAAAGCACGCATTCCTTCCAGAACCCAACAAGAAAAAACCATCCCACC ACAAAAAGAGGCTTTCTTCCTCTGCCGCCGTACCTTCCTCCAAACAAACCATTGGAATCCTCTCCTTCGAGGTGGCCAATGTCATGTCCAAAACCGTCCA CCTCCACAAATCCCTCTCTGATTCCGAGATCTCCAAGCTCAAAGCTGAGATCTTGGAGTCTCCGGGAGTCCGAAACTTGGTCTCCGGCGACGAATCCCGT CTTCTCCAGCTTGCCCTGGCTGAGAAGCTCGACGACCTCAACCGGGTCGCCGCCGTCGTCTCCCGGCTGGGCAAGAAATGCGCGGAGCCGGCTTTACAAG GGTTTGAGCATGTCTATGGAGATTTAACTGGCGGGGTGATTGATGTCAATGAATTAGGGTTTCTGGTTAAGGATATGGATGCGATGAGTCGGAGGATGGA GAGGTATGTTAGCGCCACCGCTAATTTGTACAGTGAAATGGAGGTGCTGAGTGAACTAGAACAAGCTACTAAGAAGTTTCAGATGAACCAGCATGAGGAG AGTCGGAGGGCCTTTGAACAGAAAGTGATTTGGCAGAAGCAGGATGTCAGGCATCTTAAGGACGTTTCCATTTGGAACCAGAGTTGTGATAAGGTAGTGG AGCTTTTGGTTAGGACTGTTTGTACCATCTATGCTAGGATTTGTGCTGTTTTTGGTGAATCCGTGCTGCACAAGGAGAAGAATAGTTCTACTTCTTCGTC CCCTTCTAGTAGTAAGGATGAATGCTGGGAATTCTCAGTGCAATTGAAGCGTGGTGGCAGTAGAGGAAGTGACTACTTGCATACCAAGTCCGGTCAGATT GAGCGAGCTGTGGTAAATGGTAAGCTTAAGCCTCATATTGTGGATTCAAGGAGGAACGAAATTTCGGTGTTTGAGCCTGGGGATGTGATGTTTCCTTGTG GAATTAGTCCAGGGAGGCTTTTCATGGAGTGCCTTAGCCTGACGAGCTCTGGATCCAAGTTGGATTACGATGACGAGGGTACCATTGATGATCGGAGTAG TCACATTTCCAGCTGCAAAAGCACCGCGAAGTGTGGTTTGAGCAAAGGGCTAAGCCGGTTTAGCTCTTTGAATCTAGCTCAAGGAGAGGCAGCTAGTCTA TTTGGTCCGAAGAGCAAATTGACTGTTTATGCTCCTCCAACTACCTTGGGTGGATGTGCTCTGGCATTGCATTATGCCAATGTCATAATCGTAATCGAGA AGCTGCTTCGGTATCCTCATTTGGTTGGGGAAGAAGCTAGGGATGATCTGTACCAGATGTTACCTACAAGCTTACGAATGTCATTGAGGACTAAGCTCAA GTCCTACGTGAAGAACTTGGCGATCTACGATGCACCGCTGGCTCATGATTGGAGAGAAGCAATTGACGGGATACTCAGATGGCTTGCTCCACTGGCACAT AATATGATCAGATGGCAGAGTGAGAGAAATGTGGAGCAGCGCCAGATTGTGGCGAGGACTAATGTGCTGCTGCTGCAGACATTGTACTTTGCCGATAGAG AGAGGACGGAGGGAGCTATCAGTGAGCTTCTGGTGGGGTTGAATTACATCTGCAGGTATGAACATCAGCAGAATGCATTGTTGGATTGTGCCAGTAGCTT TGATTTCGAGGATTGTATGGAGTGGCAGATGCAGTGTCGAGCTGCTTTTCTCAACTGA
AA sequence Show only first row Show all	>Lus10021210 pacid=23171365 polypeptide=Lus10021210 locus=Lus10021210.g ID=Lus10021210.BGIv1.0 annot-version=v1.0 MVAETWILKIGNQVTTNLKHAFLPEPNKKKPSHHKKRLSSSAAVPSSKQTIGILSFEVANVMSKTVHLHKSLSDSEISKLKAEILESPGVRNLVSGDESR LLQLALAEKLDDLNRVAAVVSRLGKKCAEPALQGFEHVYGDLTGGVIDVNELGFLVKDMDAMSRRMERYVSATANLYSEMEVLSELEQATKKFQMNQHEE SRRAFEQKVIWQKQDVRHLKDVSIWNQSCDKVVELLVRTVCTIYARICAVFGESVLHKEKNSSTSSSPSSSKDECWEFSVQLKRGGSRGSDYLHTKSGQI ERAVVNGKLKPHIVDSRRNEISVFEPGDVMFPCGISPGRLFMECLSLTSSGSKLDYDDEGTIDDRSSHISSCKSTAKCGLSKGLSRFSSLNLAQGEAASL FGPKSKLTVYAPPTTLGGCALALHYANVIIVIEKLLRYPHLVGEEARDDLYQMLPTSLRMSLRTKLKSYVKNLAIYDAPLAHDWREAIDGILRWLAPLAH NMIRWQSERNVEQRQIVARTNVLLLQTLYFADRERTEGAISELLVGLNYICRYEHQQNALLDCASSFDFEDCMEWQMQCRAAFLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23160			Protein of unknown function (D...		Lus10021210 [exp]	0	1
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028760 [exp]	1.4	0.8152
AT3G23160			Protein of unknown function (D...		Lus10022201 [exp]	2.0	0.7162
AT5G58320			Kinase interacting (KIP1-like)...		Lus10034448 [exp]	5.7	0.7577
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028761 [exp]	6.2	0.7292
AT5G36930			Disease resistance protein (TI...		Lus10029811 [exp]	10.6	0.6308
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10017289 [exp]	14.0	0.6775
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10005069 [exp]	19.1	0.6838
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Lus10018687 [exp]	27.8	0.6523
AT5G51480		SKS2	SKU5 similar 2 (.1)		Lus10027207 [exp]	29.7	0.6855
AT2G34930			disease resistance family prot...		Lus10039522 [exp]	50.5	0.5941

Compare expression of checked genes

Lus10021210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.