Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23150 862 / 0 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT3G04580 806 / 0 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT1G04310 617 / 0 ERS2 ethylene response sensor 2 (.1) AT1G66340 472 / 4e-156 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G40940 370 / 1e-118 ERS1 ethylene response sensor 1 (.1) AT5G35750 82 / 1e-15 AHK2 histidine kinase 2 (.1) AT1G27320 75 / 2e-13 AHK3 histidine kinase 3 (.1) AT2G01830 72 / 1e-12 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT2G47430 47 / 7e-05 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022203 [exp] 1453 / 0 AT3G23150 882 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10041159 [exp] 1251 / 0 AT3G23150 851 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10021880 [exp] 1246 / 0 AT3G23150 857 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10006574 [exp] 887 / 0 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10005517 [exp] 870 / 0 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10042549 [exp] 862 / 0 AT3G04580 944 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10022009 [exp] 857 / 0 AT3G04580 937 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10020778 [exp] 470 / 3e-155 AT1G66340 1220 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10007357 [exp] 467 / 2e-154 AT1G66340 1211 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G074300 [exp] 1197 / 0 AT3G23150 877 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.008G164400 [exp] 1142 / 0 AT3G23150 889 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.013G044100 [exp] 902 / 0 AT3G04580 960 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.019G014300 [exp] 880 / 0 AT3G04580 959 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.001G204200 [exp] 479 / 5e-159 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.003G032300 [exp] 476 / 1e-157 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.002G201500 [exp] 416 / 6e-136 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.014G164700 [exp] 82 / 8e-16 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.003G171000 [exp] 82 / 1e-15 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.010G102900 [exp] 76 / 1e-13 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF01590 [flax] [poplar] GAF GAF domain CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Lus10021212 pacid=23171368 polypeptide=Lus10021212 locus=Lus10021212.g ID=Lus10021212.BGIv1.0 annot-version=v1.0 ATGTTCAAATCATTAGCTCCTGGGCTGCTGCTGTTGACTTCCCTCCTTTTGGCTTATGTTTCTGCCAACGACAGTGGCTTCTCAAGATGTAACTGCGACG ACGAGGACAGTTTATGGAGCATAGAAACCATCCTGGAATGCCAAAGGGTGGGCGATTTCCTGATCGCCGTTGCGTATTTCTCGATCCCGATCGAGTTGCT CTACTTCATCAGCTGCTCCAACGTCCCATTCAAATGGGTACTTTTCGAATTCATTGCTTTCATTGTTCTGTGTGGGATGACCCACTTGCTCAACGGATGG ACTTATGGCCCTCACAGTTTCCATCTCATGGTTGCTGTCACAGTCTTCAAGATCCTAACTGCTTTGGTCTCCTGTGCCACCGCCATCACTCTCTTCAGCT TGATCCCTTTGCTTCTCAAGGTCAAGGTGAGGGAATTCATGTTAAAGAAGAAGACCTGGGATCTGGGTAGGGAAGTTGGAATGATTATGAAGCAAAGAGA AGCCGGATTGCATGTTCGAATGCTTACTCGGGAGATTAGGAAATCGCTTGACAGGCACACCATTTTGTACACTACACTTGTTGAGCTGTCCAAGACGCTT GGTTTGCAGAATTGTGCTGTTTGGATGCCTAATGAGATTAGGACTCAGATGCACTTGACACATGAGCTCCACGGGGGACATTACTCCGATATGGATAGCT GTGTGATACCGACATCTGATCCTGATGTTGCGAGGATTAAGGGAAGCGATGGTGTGAACATCCTAGGTATCGATTCGCCATTAGCTTCCGCGAGCTACGG TGAGTCTGGCGAGCCAGGTCCTGTGGCTGCGATTCGAATGCCTATGCTTCGTGTTTGCAATTTCAAAGGCGGAACCCCTGAAATGATCCAGGCGTGCTAT GCGATACTCGTATTGGTTCTTCCTGGTGATCAGCCTAGGTCATGGAGCAATCAAGAGCTGGAGATTATCAAAGTAGTGGCTGATCAGGTGGCTGTGGCTC TCTCCCATGCTGCGGTGCTCGAGGAATCGCAGCTCATGAGGGAGAAATTGGAGGAGCAGAATCGAGCATTGCAGCAGGCGAAGATCGACGCGATGATGGC TAGTCAAGCTAGGAACGCTTTCCAGAAGGTAATGAGTGATGGAATGAAGAGGCCGATGCATTCTATTTTGGGATTGGTGTCAATGATGCAGGATGGAAGT TTACCCAGCGAGCAACAGATTCTTGTAGATACGATGATGAAGGCGAGCAATGTGTTATCGGTGTTGATCGATGATGTGATGGAAATCTCAACCAAGGATA GCGGGAGGTTTCGAATGGACACCAAGTCTTTCCGGCTGCATTCGATGATCACAGAAGCAACTTGCCTGGCCAAGTGCTTGTGTATTTACAAAGGCTTTGG CTTTTCAATGGAAGTTGACAGGTCCTTGCCTGATCATGTTATGGGAGATGAGAGGAGGATCTTTCAGGTGATCTTGCATATGATTGGCAATTTGCTTGAT GGAAATAGTAGAGGTGGCTCTGTATTACTTCGGGTTGTGGTTGACAATGGAAGCCAAGAGAGGAATGATCAGAGATGGGCGGCGTGGAGGCAAAGCCCTT CACCGGATGGCGAGGTATCTGTCAGATTCGAAATCGGAATAACCTCTGGCGGTTCTGAATTAGGAGCCTCCACTTCAGCAATGCAGCTTGGTGGTAGAAG GTACACCAGCGAAGGGTTTGAGCAAGGTCTCAGCTTCACAGTTTGCAAAAAGCTGGTCCAGATGATGCAAGGGAACATCTGGGTAGTCCCCAACAATCAA GGTTTCGTGAAGAACATGGGACTCATCCTACGGTTTCAACTCCGTTCGTCAATCTCACTGTCCATCTCCGAGCCGGGAGATTCGTCTGAGCATCATCATC TCCCGAATTCGAACTCCTTCTTTAGGGGGTGGCAGGTTCTGTTAGTCGAGTCGGATGATTTGAACAGAAGTGTCACTCGAAGACTACTCGAGAAGCTAGG TTGCTCGGTGGTCCCTCTTTCGTCAGGGTACGAGTGCCTCAGCGCAATTGGTCCAGCCGCGTCTTCCTTCCAAGTCGTGCTGCTCGATCTACAACTGCCC GACCTGGACGGGTTTGAAGTTGCAGCGAAGATCAGGAAGTTCAGGAGCAGGAATTGGCCGCAGATTGTTGCGATGACTTCGAGCGGGGATGATGAATTGT GGGACAAGTGTATGCAGATGGGGATGAATGGTGTGATAAGGAAACCGATTATGCTACAAGGGATTGCAAATGAGCTAAGGAGAGTGGTACTGCAGGCAAA CAGAAGTGGTGGTGTAATGTAA
AA sequence Show only first row Show all	>Lus10021212 pacid=23171368 polypeptide=Lus10021212 locus=Lus10021212.g ID=Lus10021212.BGIv1.0 annot-version=v1.0 MFKSLAPGLLLLTSLLLAYVSANDSGFSRCNCDDEDSLWSIETILECQRVGDFLIAVAYFSIPIELLYFISCSNVPFKWVLFEFIAFIVLCGMTHLLNGW TYGPHSFHLMVAVTVFKILTALVSCATAITLFSLIPLLLKVKVREFMLKKKTWDLGREVGMIMKQREAGLHVRMLTREIRKSLDRHTILYTTLVELSKTL GLQNCAVWMPNEIRTQMHLTHELHGGHYSDMDSCVIPTSDPDVARIKGSDGVNILGIDSPLASASYGESGEPGPVAAIRMPMLRVCNFKGGTPEMIQACY AILVLVLPGDQPRSWSNQELEIIKVVADQVAVALSHAAVLEESQLMREKLEEQNRALQQAKIDAMMASQARNAFQKVMSDGMKRPMHSILGLVSMMQDGS LPSEQQILVDTMMKASNVLSVLIDDVMEISTKDSGRFRMDTKSFRLHSMITEATCLAKCLCIYKGFGFSMEVDRSLPDHVMGDERRIFQVILHMIGNLLD GNSRGGSVLLRVVVDNGSQERNDQRWAAWRQSPSPDGEVSVRFEIGITSGGSELGASTSAMQLGGRRYTSEGFEQGLSFTVCKKLVQMMQGNIWVVPNNQ GFVKNMGLILRFQLRSSISLSISEPGDSSEHHHLPNSNSFFRGWQVLLVESDDLNRSVTRRLLEKLGCSVVPLSSGYECLSAIGPAASSFQVVLLDLQLP DLDGFEVAAKIRKFRSRNWPQIVAMTSSGDDELWDKCMQMGMNGVIRKPIMLQGIANELRRVVLQANRSGGVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10021212 [exp]	0	1
AT4G10265			Wound-responsive family protei...		Lus10039761 [exp]	1.4	0.9128
AT4G10265			Wound-responsive family protei...		Lus10039754 [exp]	2.0	0.8697
AT5G12470			Protein of unknown function (D...		Lus10009956 [exp]	3.9	0.8608
AT1G67100	AS2	LBD40	LOB domain-containing protein ...		Lus10028469 [exp]	6.0	0.8381
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10003549 [exp]	6.5	0.8129
AT5G57500			Galactosyltransferase family p...		Lus10015527 [exp]	7.1	0.7736
AT5G11000			Plant protein of unknown funct...		Lus10005342 [exp]	8.7	0.7779
AT4G24110			unknown protein		Lus10017328 [exp]	9.7	0.8353
AT3G53390			Transducin/WD40 repeat-like su...		Lus10026500 [exp]	13.4	0.7866
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10035582 [exp]	14.5	0.8112

Compare expression of checked genes

Lus10021212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.