Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09290 69 / 3e-15 C2H2ZnF TAC1 telomerase activator1 (.1) AT5G43540 66 / 3e-14 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G23130 63 / 2e-12 C2H2ZnF FLO10, FON1, SUP SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) AT4G17810 62 / 5e-12 C2H2ZnF ZFP12 C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G53820 60 / 8e-12 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G37740 61 / 1e-11 C2H2ZnF ATZFP10, ZFP10 zinc-finger protein 10 (.1) AT5G06070 61 / 2e-11 C2H2ZnF RAB, RBE RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G42410 60 / 2e-11 C2H2ZnF ATZFP11, ZFP11 zinc finger protein 11 (.1) AT3G23140 58 / 5e-11 C2H2ZnF URO UPRIGHT ROSETTE, C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G58070 49 / 2e-07 C2H2ZnF GIS GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022204 [exp] 122 / 8e-37 AT3G09290 67 / 2e-15 telomerase activator1 (.1) Lus10021881 [exp] 95 / 8e-25 AT5G43540 67 / 3e-14 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10041160 [exp] 94 / 3e-24 AT5G43540 69 / 8e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10040767 [exp] 67 / 6e-14 AT3G09290 71 / 5e-15 telomerase activator1 (.1) Lus10033867 [exp] 66 / 1e-13 AT5G43540 65 / 1e-13 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10014755 [exp] 64 / 3e-13 AT5G43540 63 / 5e-13 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10024363 [exp] 64 / 5e-13 AT3G53820 69 / 3e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10010870 [exp] 61 / 7e-12 AT3G09290 65 / 2e-13 telomerase activator1 (.1) Lus10022206 [exp] 61 / 2e-11 AT3G23130 100 / 1e-25 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G164100 [exp] 81 / 3e-19 AT5G43540 69 / 3e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G074400 [exp] 79 / 9e-19 AT5G43540 69 / 3e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.016G101300 [exp] 71 / 8e-16 AT3G53820 92 / 2e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G089301 [exp] 69 / 4e-15 AT3G53820 96 / 1e-25 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G041600 [exp] 69 / 7e-15 AT4G17810 65 / 6e-13 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.005G221500 [exp] 69 / 7e-15 AT5G43540 61 / 6e-12 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.009G037100 [exp] 69 / 8e-15 AT3G53820 74 / 5e-17 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G041700 [exp] 64 / 7e-13 AT2G42410 105 / 3e-28 zinc finger protein 11 (.1) Potri.008G163900 [exp] 63 / 2e-12 AT3G23130 119 / 1e-33 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.005G221400 [exp] 62 / 3e-12 AT2G42410 97 / 4e-25 zinc finger protein 11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021213 pacid=23171376 polypeptide=Lus10021213 locus=Lus10021213.g ID=Lus10021213.BGIv1.0 annot-version=v1.0 ATGGCGCCGAAAAAGCAACGCAGCTCATCGGACTCATCCGGCGAAGACACCGTAAACGACACGGTGGTTTCGCTGCCGAAACCTAAACGCTCCTACGAGT GCAGTTTCTGCAAGAGAGGGTTCACCAACGCCCAGGCACTCGGTGGCCACATGAACATCCACCGCCGTGACCGCCAAAAGTCGACAGCTGCTGCCGCCAC CAACGTCCCCCAGCCGGTTGGCACCTTCGCCGTTTGGGATGCTCAATATCGCCACCTGTACTTTGATCATCACCAGCAGCCGAATGGTAATAGTGCTAAT AATGGGTATTACAATAACATGGCGGCGGTGCCTCCCTCCTCCGTTAGTAACCACCAACGTCGTCTTGATCGGTCTGTTAGCAACGTGGAGGAAGTAGTAT GGGGCACCAATTTGAGTTTGCGGGTCGGGGCGGCGGGTTCGGGTCAGGAGGAGGAGGAAGTCATGGATTTGGAACTTAGGCTGGGGCCTTATCCCCAATA G
AA sequence Show only first row Show all	>Lus10021213 pacid=23171376 polypeptide=Lus10021213 locus=Lus10021213.g ID=Lus10021213.BGIv1.0 annot-version=v1.0 MAPKKQRSSSDSSGEDTVNDTVVSLPKPKRSYECSFCKRGFTNAQALGGHMNIHRRDRQKSTAAAATNVPQPVGTFAVWDAQYRHLYFDHHQQPNGNSAN NGYYNNMAAVPPSSVSNHQRRLDRSVSNVEEVVWGTNLSLRVGAAGSGQEEEEVMDLELRLGPYPQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10021213 [exp]	0	1
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	2.0	0.9963
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	2.8	0.9963
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	3.5	0.9963
AT2G04810			Protein of unknown function (D...		Lus10020538 [exp]	4.0	0.9941
AT4G27290			S-locus lectin protein kinase ...		Lus10034815 [exp]	4.7	0.9096
					Lus10022267 [exp]	5.0	0.8393
AT4G16270			Peroxidase superfamily protein...		Lus10017069 [exp]	5.0	0.9670
AT3G44220			Late embryogenesis abundant (L...		Lus10005214 [exp]	5.5	0.9651
AT5G09360		LAC14	laccase 14 (.1)		Lus10026812 [exp]	5.9	0.9536
AT3G14470			NB-ARC domain-containing disea...		Lus10032781 [exp]	6.3	0.9375

Compare expression of checked genes

Lus10021213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.