Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23130 95 / 1e-22 C2H2ZnF FLO10, FON1, SUP SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) AT4G17810 84 / 8e-19 C2H2ZnF ZFP12 C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G37740 86 / 1e-18 C2H2ZnF ATZFP10, ZFP10 zinc-finger protein 10 (.1) AT5G06070 82 / 6e-18 C2H2ZnF RAB, RBE RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G42410 82 / 7e-18 C2H2ZnF ATZFP11, ZFP11 zinc finger protein 11 (.1) AT3G09290 65 / 3e-12 C2H2ZnF TAC1 telomerase activator1 (.1) AT3G53820 61 / 4e-11 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G43540 55 / 4e-09 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G80730 50 / 5e-07 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT3G23140 49 / 1e-06 C2H2ZnF URO UPRIGHT ROSETTE, C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022206 [exp] 216 / 2e-68 AT3G23130 100 / 1e-25 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021490 [exp] 86 / 1e-18 AT2G37740 103 / 1e-25 zinc-finger protein 10 (.1) Lus10024362 [exp] 86 / 1e-18 AT2G37740 105 / 4e-27 zinc-finger protein 10 (.1) Lus10010871 [exp] 86 / 1e-18 AT2G37740 103 / 9e-26 zinc-finger protein 10 (.1) Lus10004705 [exp] 83 / 2e-18 AT2G37740 100 / 1e-25 zinc-finger protein 10 (.1) Lus10030967 [exp] 82 / 1e-17 AT4G17810 112 / 1e-30 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10040083 [exp] 82 / 1e-17 AT4G17810 123 / 8e-35 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10004578 [exp] 74 / 1e-14 AT4G17810 95 / 6e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10000481 [exp] 73 / 1e-14 AT4G17810 100 / 8e-26 C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G163900 [exp] 108 / 3e-27 AT3G23130 119 / 1e-33 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G142900 [exp] 90 / 2e-20 AT4G17810 135 / 1e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.003G091200 [exp] 89 / 2e-20 AT4G17810 140 / 2e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G074500 [exp] 87 / 9e-20 AT3G23130 73 / 7e-16 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G059000 [exp] 88 / 2e-19 AT5G06070 99 / 2e-24 RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G089600 [exp] 86 / 1e-18 AT2G37740 102 / 2e-25 zinc-finger protein 10 (.1) Potri.010G199800 [exp] 86 / 1e-18 AT5G06070 100 / 4e-25 RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.016G101400 [exp] 85 / 2e-18 AT2G37740 108 / 3e-27 zinc-finger protein 10 (.1) Potri.002G041700 [exp] 81 / 8e-18 AT2G42410 105 / 3e-28 zinc finger protein 11 (.1) Potri.005G221400 [exp] 78 / 1e-16 AT2G42410 97 / 4e-25 zinc finger protein 11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021215 pacid=23171375 polypeptide=Lus10021215 locus=Lus10021215.g ID=Lus10021215.BGIv1.0 annot-version=v1.0 ATGAAACTGTGGTCTGTGAAGAGCAGAAGTGAAGCATCCAGCTTCCTGACGTGTAAGCAGTTGAATTTGGTGGACGCATGTACGCAGTACTCTCCTCCGC CGCTACCACCACGAGAATGCCCCATCTTGAACCTGAATGCCAACCCTAACCCTAACCCTAGCTTCTCATCATCAGCAGCTTCATCTCCTCCTTCTCCTTC TCCACCTGGCAGGAGTAGATGGGCTGAGGGTGTTGACCATTTGACTAAAGTTGGGACCCGCAAGTCTCTCTTTGGAACTGAGTTTGATGGATCCAACAAG TTGAGGAAGAGAGGTGGGGAGATTAATGTAAGCTTGGAGTTGGAGATTGGATCAGTCGTTACCGGCGCCGGTGGCTCCTCCAAAAAAGAGCAGCTTGACT TGGAGCTTCCGCCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTCTTTTTTTTTTAATTCATTTTGAAGCTTATCATTCAACCTCTCTGCAGCAACA ATCCATCCATTCAACATCTCATCATTTCACAACCATCATTTCTCTCCTCCCAGCCAGTCAGTTCGATATGGAGAGACTAGTGATGAGCAGCAGCAGCAGC ATGAAGGACCACAGTAACCTCGGTGGGCGAAGCAACATTAGATCACCAGCACAACCACCACCACCACCGTCATGGAGCTGCACCACCAACAGCACCATCA CCACTACTAGCCACCACCACCACCAGCATCATCCGGACTATCTCTCGGGGTTCACGTGGCCGCCGAGATCCTACACTTGCACCTTCTGCAAGAGGGAATT CAGGTCCGCACAGGCTCTGGGCGGCCACATGAACGTCCACCGACGTGACCGGGCGCGCCTTAGGCAGTACTCTCCTCCGCCGCTACCACCACGAGAATGC CCCATCTTGAACCTGAATGCCAACCCTAACCCTAACCCTAGCTTCTCATCATCAGCAGCTTCATCTCCTCCTTCTCCTTCTCCACCTGGCAGGAGTAGAT GGGCTGAGGGTGTTGACCATTTGACTAAAGTTGGGACCCGCAAGTCTCTCTTTGGAACTGAGTTTGATGGATCCAACAAGTTGAGGAAGAGAGGTGGGGA GATTAATGTAAGCTTGGAGTTGGAGATTGGATCAGTCGTTACCGGCGCCGGTGGCTCCTCCAAAAAAGAGCAGCTTGACTTGGAGCTTCGGTTAGGCATT TGA
AA sequence Show only first row Show all	>Lus10021215 pacid=23171375 polypeptide=Lus10021215 locus=Lus10021215.g ID=Lus10021215.BGIv1.0 annot-version=v1.0 MKLWSVKSRSEASSFLTCKQLNLVDACTQYSPPPLPPRECPILNLNANPNPNPSFSSSAASSPPSPSPPGRSRWAEGVDHLTKVGTRKSLFGTEFDGSNK LRKRGGEINVSLELEIGSVVTGAGGSSKKEQLDLELPPSSSSSSSSSSSLFFLIHFEAYHSTSLQQQSIHSTSHHFTTIISLLPASQFDMERLVMSSSSS MKDHSNLGGRSNIRSPAQPPPPPSWSCTTNSTITTTSHHHHQHHPDYLSGFTWPPRSYTCTFCKREFRSAQALGGHMNVHRRDRARLRQYSPPPLPPREC PILNLNANPNPNPSFSSSAASSPPSPSPPGRSRWAEGVDHLTKVGTRKSLFGTEFDGSNKLRKRGGEINVSLELEIGSVVTGAGGSSKKEQLDLELRLGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23130	C2H2ZnF	FLO10, FON1, SU...	SUPERMAN, FLORAL ORGAN NUMBER ...		Lus10021215 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	5.7	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	8.1	1.0000
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	9.9	1.0000
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10009630 [exp]	10.8	1.0000
					Lus10011605 [exp]	12.0	1.0000
					Lus10024141 [exp]	14.1	1.0000
					Lus10025268 [exp]	14.2	1.0000
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10026232 [exp]	15.2	1.0000
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	17.2	1.0000
					Lus10013255 [exp]	18.2	1.0000

Compare expression of checked genes

Lus10021215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.