Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04300 732 / 0 TRAF-like superfamily protein (.1.2.3.4) AT5G43560 559 / 0 TRAF-like superfamily protein (.1.2) AT5G52330 397 / 2e-128 TRAF-like superfamily protein (.1.2) AT4G16045 169 / 2e-45 TRAF-like superfamily protein (.1) AT3G11910 80 / 8e-15 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT5G06600 78 / 3e-14 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT1G69650 68 / 6e-12 TRAF-like family protein (.1) AT3G58410 59 / 7e-09 TRAF-like family protein (.1) AT3G58360 56 / 5e-08 TRAF-like family protein (.1) AT3G58210 56 / 1e-07 TRAF-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021218 [exp] 1925 / 0 AT1G04300 897 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Lus10022207 [exp] 1580 / 0 AT1G04300 722 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Lus10022208 [exp] 1220 / 0 AT1G04300 424 / 8e-134 TRAF-like superfamily protein (.1.2.3.4) Lus10008949 [exp] 84 / 6e-16 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10043456 [exp] 81 / 6e-15 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10029309 [exp] 80 / 8e-15 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034130 [exp] 80 / 9e-15 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10034129 [exp] 75 / 1e-14 AT5G06600 164 / 2e-46 ubiquitin-specific protease 12 (.1.2.3) Lus10025569 [exp] 77 / 3e-14 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G075000 [exp] 1154 / 0 AT1G04300 855 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.008G163300 [exp] 1146 / 0 AT1G04300 846 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.008G012600 [exp] 86 / 1e-16 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G245100 [exp] 84 / 5e-16 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 81 / 6e-15 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 80 / 9e-15 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.001G130700 [exp] 63 / 4e-10 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.003G103200 [exp] 60 / 3e-09 AT3G17380 251 / 2e-82 TRAF-like family protein (.1) Potri.018G025600 [exp] 55 / 4e-07 AT2G25320 2378 / 0.0 TRAF-like family protein (.1) Potri.008G005300 [exp] 53 / 5e-07 AT3G17380 317 / 7e-108 TRAF-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF00917 [flax] [poplar] MATH MATH domain
Representative CDS sequence Show only first row Show all	>Lus10021216 pacid=23171412 polypeptide=Lus10021216 locus=Lus10021216.g ID=Lus10021216.BGIv1.0 annot-version=v1.0 ATGGCTCGGACTGCCAGCGAGGAAGCTGGAGCTGGAAGAACTGCTAACGGGATTTCCAGTGGGCAGCGCTGTCAAGCTGGCGAAACAATGGTTGAATGGC GGTCTTCTGACCAGGTGGTAACTGGGACTCCATCAACTTCACCCCCTTATTGGGACACTGATGACAACGATGACGGTGGGCTTAAACCCTCAGAGTTGTA TGGAAAATATACATGGAAGATTGACAAATTTTCACAGATTAACAAAAGGGAACTCCGTAGTAATGTATTTGAGGTTGGCGGCTACAAATGGTACATATTG ATCTACCCCCAAGGTTGTGATGTCTGCAATCATCTCTCTTTGTTTCTCTGCGTTGCCAATCATGAAAAGCTTCTTCCAGATACATTACATCGTTTTTGGA AGAAAGAGCATGACTGGGGTTGGAAGAAGTTCATGGAGCTGTCAAAAGTTGGGGACGGATTTTTGGATGCTGCTGACACTCTAATAATAAAGGCACAAGT GCAAGTCATCAGTGACAAAACAGATCGCCCGTTCCGTTGCCTTGACTGTCAATATAGGAGAGAACTTGTTAGAGTATACCTGAGCAATGTAGAGCAGATC TGTCGGCGCTTTGTGGAGGAGAGACGGGGCAAGCTTGTTAAATTATTAGGGGACAAAAATAGGTGGTCAAGTTTTTGTTCTTTCTGGCTGGGGATGGATC AGAATGCTCAACGTCGTATGTCTAGGGAGAAGATGGATGTTATTTTAAAAGTAGTTGTTAAGCATTTCTTTATAGAGAAGGAAGTTACATCGACGTTGGT GATGGATTCCTTGTATAGTGGACTGAAGGCTCTCGAGGGACAGGCTAAGAACAAGAAAGGAAAGGTTAAAAGTCATTCTGAAGAAATCCCAGCTCCTATT GTACATGTTGAAAAAGATACATTTGTATTAGTAGATGATGTGCTGCTATTACTAGAGAGGGCTGCTATGGAACCTTTACCTCCAAAGGATGATAAAGGAC CTCAGAATCGTACAAAGGATGGTAATTCAGGGGATGAATTTACCAACGATTCCATTGAGCGTGATGAAAGACGGCTTACTGAATTAGGCCGTAGGACTGT GGAAATATTTGTCCTAGCTCATATTTTCAACCATAAGATTGAAGTTGCCTACCAGGAAGCTGTTGCTCTGAGGAGGCAAGAAGAGCTAATTCGTGAAGAA GAGGAAGCTGGATTAGCTGGGGTCGAACAAAAAGCTAAGCGTGGGGCTACTGAAAAGGAAAAGAAATCTAAGAAAAAACAAGCAAAACAGAAACGCAACA ATCGGAAAGGAAAGGAAAAAGGTAAGGAAGAACGCCCTGGTTCTGCAACATTAGACAATCATCAAGAAGACAACACTAGCAATGGTAAACAAGTTACCCT AAACAATGAGGTGCAACCTACAGATAAGAAACCTGATGTCCCAGAAGATGTTTCTGATGTGTCTGATTCCATTGATGGTGTTACCGAAGTTCTCCAGCTT GATTTGGAGGACAGAGATACTAGTACTGTCAACTGGGATACTGATACTTCAGAAGTTCATCTACCCGCTGAAGATTGCAGCGGTGGTGTCAGTGGGTTAT CATCAGCAGCGAATGGCACTGCCGAGAAAAGGAGTGTAGCTGCTATGGATGATAGTTCGTCGACATGTTCAACTGATTCTTTGCCCTCCGTAGTTATGAA TTGTTCCTACAAAGGAAGTTCAGTCCCGACCTACCAGCGTGATAAATCACCTAACAGGGGGAAGAACCATCGAGGTAAGATGACATCCAATGGGGCTTGG GGTTTTGAAGCAGAAAGTCAGCCCTCTGGCTCTACAATAGGCTCTCGGGATCTTAACAGTAAGACTGGAAATGGCAAGTCTAATGGATGTGAATTTGAGC AGCATATGATTAAAAAGGATGAGAAAGTTGCTTTGCCGTCTAGGAAGCCAAGTACCGCAACCATTGTTGAATTGGAGAAACACTCTAGAGAAACGGCAAA ATCTATACTGACCTCTCCGAGAAGTCCTTCGAAAACTCCAGCCGGGACTATTCAAGTTAAACCAGAATTGAAGGTTTCTATTACAGTAGATGCTGCTAAA GTCCAGAGCATTTGTTCTCCCTTGCCACAACCGACTGAGAAACGAGCAGGCAGTACCCTCACCCAAAATGCTAGTCCACCCAAACCAGAAATCCACAATG CTTCAGCTCCAAAATTCTCTGAAAAGCCAACACAACAGCAAGTCCCTGTTGTTTCAAGGCCATCCAGTGCTCCTCTCGTGCCTGTACCTAGACCGGGTAC TCCTGCTGTTTCAATGCCTCTAACGAGCGCCCCAATTTCTCGTTCTGTGAGTGCAACCGGGCGGTTAGGTCCTGAGCCTACCTTGACGTCGCATAGTTAT ATTCCCCAGTCCTACAGAAATGCTATAGTTGGGAACTCTGCTGTTCGAACTTCAAGCAGCTCTATTAGTGATCCCAATTCACCGAATCTGAGGATGAATC TGTCTACAGCGCCAACCATGGTATCTCCATATGTGCCTCGGAGCTCTGAAAGAGCTGATCTCAACACTGTGCAATCAGGTTATCCATTTTCAATGATGAC GAGAGATGTGTTTCAAACTGGACATCAGTGGATGGAGATGGAGATGGAGAGTCCTCAAAGGGATCCTGTCAGGAGTATGCAGTGTAATTCTTCATCGTTT TTAAATGAGATTCAGAACCTCGATTTCAATAATCGGGTACACAGCAGTTCACGGGATCAGTACCCTGCAGATTTGCCATCTTCAATATACAGGCGTCAGA ATCAAGGTGTCTCAACAGATGAATTCCCACATCTTGATATCATCAATGACTTGCTTGATGATGAACATGTTATTGCGAGGGGTGTTAGGGCAGAAGGTTT CAACTCTTACAGCAATGGTCCTCACTACTTAAGTTGGCAGTCATCTATCCCTTGTGATTTAGGAGCGTCTGCTAACTCATCAAGTAGCAGCAGCAGCAGC AGCAGCAGTTCATGCAGTAAGTTTGAGCGGACAAGAAGTTACCAGGACGAAGTGTACCGGCAAGGGTACAGCTCTTTCGGAGGGCATTATGACCCAATAA GCGACTACGTTCCTCATCTACCTTATGCAAACGGGCAGATGGATACCTTGATATCTAATCAGTGGCAGTTTCCAACAAGTCCAGATTTTTCTTTAGCTGG TATGAGAAATGCAGAAGGTGATGGATCAACATACTTGAGTCCAGATTATCCTTCGAATGTGGCATGTGGGGTGAATGGTTATACGATGTATCGGCCTTCA AATGGGCATTGA
AA sequence Show only first row Show all	>Lus10021216 pacid=23171412 polypeptide=Lus10021216 locus=Lus10021216.g ID=Lus10021216.BGIv1.0 annot-version=v1.0 MARTASEEAGAGRTANGISSGQRCQAGETMVEWRSSDQVVTGTPSTSPPYWDTDDNDDGGLKPSELYGKYTWKIDKFSQINKRELRSNVFEVGGYKWYIL IYPQGCDVCNHLSLFLCVANHEKLLPDTLHRFWKKEHDWGWKKFMELSKVGDGFLDAADTLIIKAQVQVISDKTDRPFRCLDCQYRRELVRVYLSNVEQI CRRFVEERRGKLVKLLGDKNRWSSFCSFWLGMDQNAQRRMSREKMDVILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQAKNKKGKVKSHSEEIPAPI VHVEKDTFVLVDDVLLLLERAAMEPLPPKDDKGPQNRTKDGNSGDEFTNDSIERDERRLTELGRRTVEIFVLAHIFNHKIEVAYQEAVALRRQEELIREE EEAGLAGVEQKAKRGATEKEKKSKKKQAKQKRNNRKGKEKGKEERPGSATLDNHQEDNTSNGKQVTLNNEVQPTDKKPDVPEDVSDVSDSIDGVTEVLQL DLEDRDTSTVNWDTDTSEVHLPAEDCSGGVSGLSSAANGTAEKRSVAAMDDSSSTCSTDSLPSVVMNCSYKGSSVPTYQRDKSPNRGKNHRGKMTSNGAW GFEAESQPSGSTIGSRDLNSKTGNGKSNGCEFEQHMIKKDEKVALPSRKPSTATIVELEKHSRETAKSILTSPRSPSKTPAGTIQVKPELKVSITVDAAK VQSICSPLPQPTEKRAGSTLTQNASPPKPEIHNASAPKFSEKPTQQQVPVVSRPSSAPLVPVPRPGTPAVSMPLTSAPISRSVSATGRLGPEPTLTSHSY IPQSYRNAIVGNSAVRTSSSSISDPNSPNLRMNLSTAPTMVSPYVPRSSERADLNTVQSGYPFSMMTRDVFQTGHQWMEMEMESPQRDPVRSMQCNSSSF LNEIQNLDFNNRVHSSSRDQYPADLPSSIYRRQNQGVSTDEFPHLDIINDLLDDEHVIARGVRAEGFNSYSNGPHYLSWQSSIPCDLGASANSSSSSSSS SSSSCSKFERTRSYQDEVYRQGYSSFGGHYDPISDYVPHLPYANGQMDTLISNQWQFPTSPDFSLAGMRNAEGDGSTYLSPDYPSNVACGVNGYTMYRPS NGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04300			TRAF-like superfamily protein ...		Lus10021216 [exp]	0	1
AT1G04300			TRAF-like superfamily protein ...		Lus10022207 [exp]	1.0	0.9465
AT1G04300			TRAF-like superfamily protein ...		Lus10021218 [exp]	1.4	0.9302
AT1G04300			TRAF-like superfamily protein ...		Lus10022208 [exp]	1.7	0.9301
AT3G06620			PAS domain-containing protein ...		Lus10037772 [exp]	3.5	0.9119
AT2G39260			binding;RNA binding (.1)		Lus10023481 [exp]	5.2	0.8584
AT1G26190			Phosphoribulokinase / Uridine ...		Lus10030919 [exp]	7.1	0.8776
AT1G11480			eukaryotic translation initiat...		Lus10039708 [exp]	8.1	0.9043
AT4G30790			unknown protein		Lus10007701 [exp]	10.2	0.8622
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10014505 [exp]	11.5	0.8970
AT1G04830			Ypt/Rab-GAP domain of gyp1p su...		Lus10037829 [exp]	13.7	0.8842

Compare expression of checked genes

Lus10021216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.