Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56290 628 / 0 CwfJ-like family protein (.1) AT5G56900 81 / 4e-16 C3HZnF CwfJ-like family protein / zinc finger (CCCH-type) family protein (.1), CwfJ-like family protein / zinc finger (CCCH-type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022209 [exp] 1110 / 0 AT1G56290 751 / 0.0 CwfJ-like family protein (.1) Lus10008172 [exp] 466 / 5e-158 AT1G56290 509 / 3e-175 CwfJ-like family protein (.1) Lus10027982 [exp] 147 / 4e-36 AT2G48060 1580 / 0.0 unknown protein Lus10021589 [exp] 76 / 4e-14 AT5G56900 803 / 0.0 CwfJ-like family protein / zinc finger (CCCH-type) family protein (.1), CwfJ-like family protein / zinc finger (CCCH-type) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G415900 [exp] 758 / 0 AT1G56290 768 / 0.0 CwfJ-like family protein (.1) Potri.006G152100 [exp] 87 / 1e-17 AT5G56900 852 / 0.0 CwfJ-like family protein / zinc finger (CCCH-type) family protein (.1), CwfJ-like family protein / zinc finger (CCCH-type) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04676 [flax] [poplar] CwfJ_C_2 Protein similar to CwfJ C-terminus 2 CL0265 [flax] [poplar] HIT PF04677 [flax] [poplar] CwfJ_C_1 Protein similar to CwfJ C-terminus 1
Representative CDS sequence Show only first row Show all	>Lus10021219 pacid=23171415 polypeptide=Lus10021219 locus=Lus10021219.g ID=Lus10021219.BGIv1.0 annot-version=v1.0 ATGATATCTGCTGGAGGTAAAGACGGAAGCAATTCTTCCAAGAAGAGGAGGAAGGACGATAAAAGGGAAAAGAGAGGGAAGAAAAGCTCACTATCGAAGA GTAGTTCTGATGATGATTTTGAGAGAATTAAGGAAGGTTCGAGGAGAAAGAAGTGGTACTCCTCTGACGATTATTCCTCTTCGTCCTCGTCTGAAGATGA GGATCGAAAAGGAAAAACTAGGAAGAGAAAAGGGGTAAAAGGAAGCAGGAAAGTTGATCACTCGCCAGATGGTCGTAGAGAATCCGACTCCATCAAGGAA ATGGAAGTTACTAGGAAGGAAATGGGATTAGACTGGATGCTTAGACCTTCAGACCCTTCTGAGAAAAGGGTTGCTCCCAAGGTTGATGAGCAGCCAGTGG AACCTGCTGAGGAGGTGAAAAGGGCAAATCCCAGAGAATTAAATCCCTATCTGAAGGATGATGGAAGTGGTTACCCTGATGAGGCGGAGGAAAAACGTGG CGGAGACAAGCTCCCTAGATCTGCAGCTGTTGGAGATGGAGGTGCAAGCTGGAGGCTGAAAGCCCTAAAGCGTGCAGAAGAACAAGCAGCTAGAGACGGG CGGAAACTAGACGAGGTGGTGGAAGAAAGGTGGGGCTCTCTTGGTCAATTGGCTGCCTCTGCTGCATCTCACAGGGCAGCCCCTTCTCGTGCTCATCTAC ATGCCATTAGAAATAGACAAATGAGGCAGAAAGAGGAACAAGGACCTGCCACAAATGGTCGAAATGGGGAAGATATTGAGAAGACTCCTGACAGAAGTTA CTTGAAGGATGTTTCTGTTCGCCATCCTGAGATGAAAGCCCCTAAAGTCCGTGACAGCTTATCTTGGGGAAAGCAGAGAATTCCAAAGCTGTCTACGAGC GATGCAAGCATTATATCCAGTGCAGCCTCGAGCTTAAATAAGTTCGCTAATGATGGGAACTTTATGAACCAAGTCCTTGGTCAGACTAGTGATTTGGGTA GCTCAAATACAAAACTAGATGTCATATCTAAGGTTGATTCGTCCGACAGGAGCCAACCTGCTGAATGTACTGTAGTGATTACAGAAGGAATGACTGCAAA TCAATTGGCAGCCAAGGCCTTGCAGCTTCGATTAAAAGGCAAGCCTGAAGAAGCTGATAAACTAATGAAAGAGTCTGAAAAGCTGAAGGAGAAGCAGAAT GCTGGGGAGAAAATGGTTCAACCACAAACTGGTGGAAGTGCTAACAGGTATGTTCAACATCACTCCAACATGCGAAAGAAGGATGATGACAATGCGGACA AAAACTTAGCTCGGACCATAATGCACAATAAACAATATAGCTTATCAGGCCGTGCTGATGATGAGTACGATTTTGAGGATGGCCCAAGAAAGAAATCACG AAAGAAGGAGAAAGACAATGTTCGGAAATCTGAGAACTTCAGTCTTGGTAGGAGCATCATGACACAACAAGACCGCTGTCTATTTTGCTTTGAGAATCCA AATAGACCAAAGCATTTAGTTTTGTCGATAGCAAACTTCACCTATTTGATGTTGCCTCAAAGGAAGCCAGTTGTACCAGGCCATTGCTGCATCGTACCTT TACAGCATGAATCGTCTACAAGGACCCTAGACAATAACGTATGGGAGGAGATTCGGAATTTCAAGAAATGCCTGATAATGATGTTTGCAAAGCAAGACAA AGAGGTAGTGTTTCTTGAAACGGTAATGGGTTTGGCCAAACAACGTCGACATTGTTTAGTTGAGTGCATCCCTTTGCCACAAGACATTGCTAAAGAAGCC CCTCTTTATTTCAAAAAGGCAATCGACGAGGCTGAAGACGAATGGAGTCAACACAATGCAAAAAAGCTGATCGACACGAGCATAAAGGGGCTGCGGGGAT CTATCCCCAAGGACTTCCCATATTTCCATGTTGAATTTGGATTGAAGAAAGGGTTCGCCCATGTTATCGATGACGAGAGTCAGTTTAACAGCAGCCTCGG CCTTAATGTCATAAGAGGGATGATGCAGCTACCCGATGAAGATATGTATCGACGAAGGAGACAAGATTCTGGAGAAGGACAGAAGCTGGCAGTTGCTGAG TTTGTGCGGGATTGGCAACCTTTCGATTGGACCAAACAGCTATGA
AA sequence Show only first row Show all	>Lus10021219 pacid=23171415 polypeptide=Lus10021219 locus=Lus10021219.g ID=Lus10021219.BGIv1.0 annot-version=v1.0 MISAGGKDGSNSSKKRRKDDKREKRGKKSSLSKSSSDDDFERIKEGSRRKKWYSSDDYSSSSSSEDEDRKGKTRKRKGVKGSRKVDHSPDGRRESDSIKE MEVTRKEMGLDWMLRPSDPSEKRVAPKVDEQPVEPAEEVKRANPRELNPYLKDDGSGYPDEAEEKRGGDKLPRSAAVGDGGASWRLKALKRAEEQAARDG RKLDEVVEERWGSLGQLAASAASHRAAPSRAHLHAIRNRQMRQKEEQGPATNGRNGEDIEKTPDRSYLKDVSVRHPEMKAPKVRDSLSWGKQRIPKLSTS DASIISSAASSLNKFANDGNFMNQVLGQTSDLGSSNTKLDVISKVDSSDRSQPAECTVVITEGMTANQLAAKALQLRLKGKPEEADKLMKESEKLKEKQN AGEKMVQPQTGGSANRYVQHHSNMRKKDDDNADKNLARTIMHNKQYSLSGRADDEYDFEDGPRKKSRKKEKDNVRKSENFSLGRSIMTQQDRCLFCFENP NRPKHLVLSIANFTYLMLPQRKPVVPGHCCIVPLQHESSTRTLDNNVWEEIRNFKKCLIMMFAKQDKEVVFLETVMGLAKQRRHCLVECIPLPQDIAKEA PLYFKKAIDEAEDEWSQHNAKKLIDTSIKGLRGSIPKDFPYFHVEFGLKKGFAHVIDDESQFNSSLGLNVIRGMMQLPDEDMYRRRRQDSGEGQKLAVAE FVRDWQPFDWTKQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	0	1
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10004517 [exp]	1.0	0.9647
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	2.8	0.9580
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10041088 [exp]	3.9	0.9551
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	4.0	0.9547
AT4G00755			F-box family protein (.1.2)		Lus10015001 [exp]	5.5	0.9509
AT2G12646			PLATZ transcription factor fam...		Lus10008031 [exp]	6.3	0.9416
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	6.7	0.9542
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012306 [exp]	6.9	0.9481
AT5G24870			RING/U-box superfamily protein...		Lus10026941 [exp]	7.3	0.9477
AT5G46550			DNA-binding bromodomain-contai...		Lus10002784 [exp]	8.5	0.9452

Compare expression of checked genes

Lus10021219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.