Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23100 276 / 2e-93 XRCC4 homolog of human DNA ligase iv-binding protein XRCC4 (.1.2) AT1G61410 98 / 1e-25 DNA double-strand break repair and VJ recombination XRCC4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022210 [exp] 398 / 1e-141 AT3G23100 295 / 7e-101 homolog of human DNA ligase iv-binding protein XRCC4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G075900 [exp] 308 / 2e-106 AT3G23100 310 / 8e-107 homolog of human DNA ligase iv-binding protein XRCC4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06632 [flax] [poplar] XRCC4 DNA double-strand break repair and V(D)J recombination protein XRCC4
Representative CDS sequence Show only first row Show all	>Lus10021220 pacid=23171381 polypeptide=Lus10021220 locus=Lus10021220.g ID=Lus10021220.BGIv1.0 annot-version=v1.0 ATGGATACGACGGCGGCGACGAGGCACACATGCTTGAAGCTCGAGATTTCCGACGCTACGAGCGAACCGGTATTCGTCAAAGGAACTTGGTTCGAGACTC ACTTCGACCTCTCTGTAACGGACGGCCTTCACGCTTGGGTTTGCTACGCTACGGAAGATGAGGTTAAAGAGAGAGCTGCGCAGTGGGATCAATTGGTTAC TGAGTACATTCAATTGGCTGAGAATCACCTAGGGTTTCAAATCCCTGGACCGGTTTACAGGTTCGACGAAGCCGGCGTTGGTTGTAAACGATTATCGTGG ACCTTTGAAAAAGAAGGGATGACGCTTCAATGGAGATGGAAGTTCAAGCCATCGCCGGACAGTAAGAAGACTACAGCAAGGATCTTGGATTTCCTTCTGG ACGCAAATATAAGGCTCGGTGAAGAAGTTGTTAGAAAGACGCGGTCGTTTGAACGGATGAAAGGGGAAGCTGAGAAATGCCTGGCGCAAAGTGAGAAGTA CTGCAGTGAGAAAGTGGAGTTTGAGTCTGCAATGTATGCAAAGTTCCATGCAGTTCTAAACTCGAAGAAGCAGAAAATTAGAGAGCTTCGAGACCAGCTC TCCAAGAAGCAACCACCAGAACGAGAAGACACTGATGAGGACAAAGAAGAAAAGGGAGAATCGACGGACAAAACTGAAAGCTTCGATGAAAGTGACGATG CAAGTGAGGAAGAAGCTCACGGGAAAGCAACAGCAGCTTCATCGTCGAGTGGAAGGGGAAGGGGCAGGGGAAGAAAGAGAAGCACTCTTAATTAA
AA sequence Show only first row Show all	>Lus10021220 pacid=23171381 polypeptide=Lus10021220 locus=Lus10021220.g ID=Lus10021220.BGIv1.0 annot-version=v1.0 MDTTAATRHTCLKLEISDATSEPVFVKGTWFETHFDLSVTDGLHAWVCYATEDEVKERAAQWDQLVTEYIQLAENHLGFQIPGPVYRFDEAGVGCKRLSW TFEKEGMTLQWRWKFKPSPDSKKTTARILDFLLDANIRLGEEVVRKTRSFERMKGEAEKCLAQSEKYCSEKVEFESAMYAKFHAVLNSKKQKIRELRDQL SKKQPPEREDTDEDKEEKGESTDKTESFDESDDASEEEAHGKATAASSSSGRGRGRGRKRSTLN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Lus10021220 [exp]	0	1
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10037048 [exp]	5.9	0.9067
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10032609 [exp]	6.7	0.8875
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	10.7	0.8993
AT5G07950			unknown protein		Lus10034694 [exp]	12.1	0.8680
AT3G15150		HPY2, ATMMS21	HIGH PLOIDY2, A. THALIANA METH...		Lus10015968 [exp]	12.5	0.8761
AT4G32050			neurochondrin family protein (...		Lus10023067 [exp]	13.0	0.8467
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042905 [exp]	15.8	0.8825
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Lus10012170 [exp]	17.9	0.8844
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	23.7	0.8611
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023850 [exp]	24.3	0.8676

Compare expression of checked genes

Lus10021220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.