Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43600 607 / 0 ATAAH-2, UAH ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE 2, ureidoglycolate amidohydrolase (.1) AT4G20070 124 / 7e-31 ATAAH allantoate amidohydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022211 [exp] 639 / 0 AT5G43600 603 / 0.0 ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE 2, ureidoglycolate amidohydrolase (.1) Lus10038372 [exp] 124 / 5e-31 AT4G20070 706 / 0.0 allantoate amidohydrolase (.1) Lus10036233 [exp] 123 / 1e-30 AT4G20070 697 / 0.0 allantoate amidohydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G076100 [exp] 639 / 0 AT5G43600 680 / 0.0 ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE 2, ureidoglycolate amidohydrolase (.1) Potri.001G160100 [exp] 130 / 5e-33 AT4G20070 729 / 0.0 allantoate amidohydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10021221 pacid=23171413 polypeptide=Lus10021221 locus=Lus10021221.g ID=Lus10021221.BGIv1.0 annot-version=v1.0 ATGGCGTCTCCAAAGCTTCATCCTACAAGCTATTTCCCCTTTCTTCTGCTAGTCTGCTTAATCAGCTGCGCAAAAATCTCAACACTAGCAAATGAAGACG ACACTATCAGAACCATGGAGGATTTCTCTGGCTACCCATTTCATGAAACAATCAATCTCTTCGGTTCCAGCTCACTTTCAGTTGACGGCGAAAGCCTGCA GAGACAGATTGATGAGCTGTCGAACTTCTCGGATACACCAGCACCATCGGTCACTAGGATTCTATATACTGACAAGGATGTCTTGGCTCGCAGGTACGTG AAGAATTTGATGGGACTTTCTGGCCTCTCTGTTAGAGAAGATGCGGTGGGAAATATATTCGGCCGCTGGGATGGGAACCAGCCAGGGCTCCCAGCAGTGG CCACCGGTTCTCACATTGATGCCATTCCATACTCTGGAAAGTATGATGGAGTTGTCGGTGTCTTGGGTGCAATAGAAGCCATAAATGTATTGAAGAGGTC AGGGTTCCAACCAAAGAGGTCACTAGAAGTTATCTTATTCACATCAGAAGAACCAACAAGATTCGGGATCAGCTGTTTGGGAAGCCGACTCTTGGCTGGA AGTAACATGCTGGCTGAAGCTTTGAAGACAACAGTTGATGGTCAAAATATATCATTTGTAGAGGCTGCTAGATCTGCTGGTTATATGAAAGATGGTGATG ACTTATCCAGTGTTTTCTTAGACAACAGAAATTATTCTGCTTTCCTGGAACTTCATATAGAGCAGGGGCCAACTCTAGAGGCAGAAGGTTTGTCCATCGG TATAGTGACTGCCATAGCAGCCCCAGCTAGCATCAAGGTCGATTTTGAAGGGAATGGAGGCCATGCCGGTGCTGTTTTGATGCCAAACCGAAATGATGCT GGACTTGCAGCTGCTGAGTTGGGACTAGCTGTTGAGAAACATGTACTAGATTCCGGTTCAATTGATACCGTCGGTACAGTAGTTCATCTTTTCATAAGTA TTCTGGATCTTCATCCTGGTGCAATCAACAGCATACCAAGCAAGTCGCACCTAGAAATAGATAATTCTGTAATGGCGGCTATGGAAGACGCATCAAAGGA GTTGGACTTAACTCATAAGATGATGATAAGCCGAGCCTACCATGATTCCCTGTTTATGGCAAGAAAAGCTCCAATGGGCATGCTATTCATTCCATGCTTC AAAGGATACAGCCATAAACCTGAAGAATATTCTTCCAGGCAGGATATGGCCAACGGTGTCAAAGTACTTGCCCTTACACTCGCCAAACTCTCTCTACATT GA
AA sequence Show only first row Show all	>Lus10021221 pacid=23171413 polypeptide=Lus10021221 locus=Lus10021221.g ID=Lus10021221.BGIv1.0 annot-version=v1.0 MASPKLHPTSYFPFLLLVCLISCAKISTLANEDDTIRTMEDFSGYPFHETINLFGSSSLSVDGESLQRQIDELSNFSDTPAPSVTRILYTDKDVLARRYV KNLMGLSGLSVREDAVGNIFGRWDGNQPGLPAVATGSHIDAIPYSGKYDGVVGVLGAIEAINVLKRSGFQPKRSLEVILFTSEEPTRFGISCLGSRLLAG SNMLAEALKTTVDGQNISFVEAARSAGYMKDGDDLSSVFLDNRNYSAFLELHIEQGPTLEAEGLSIGIVTAIAAPASIKVDFEGNGGHAGAVLMPNRNDA GLAAAELGLAVEKHVLDSGSIDTVGTVVHLFISILDLHPGAINSIPSKSHLEIDNSVMAAMEDASKELDLTHKMMISRAYHDSLFMARKAPMGMLFIPCF KGYSHKPEEYSSRQDMANGVKVLALTLAKLSLH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43600		ATAAH-2, UAH	ARABIDOPSIS THALIANA ALLANTOAT...		Lus10021221 [exp]	0	1
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10021848 [exp]	4.7	0.8002
AT3G07180			GPI transamidase component PIG...		Lus10022778 [exp]	5.5	0.7650
AT4G36280			Histidine kinase-, DNA gyrase ...		Lus10025978 [exp]	7.6	0.7881
AT3G05725			Protein of unknown function (D...		Lus10031405 [exp]	20.8	0.7345
AT2G28830		AtPUB12	PLANT U-BOX 12 (.1)		Lus10014221 [exp]	24.5	0.7151
AT1G03330			Small nuclear ribonucleoprotei...		Lus10000666 [exp]	25.2	0.7880
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10006383 [exp]	25.5	0.7828
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010376 [exp]	35.8	0.7266
AT3G44590			60S acidic ribosomal protein f...		Lus10026712 [exp]	36.4	0.7489
AT5G47900			Protein of unknown function (D...		Lus10036333 [exp]	38.5	0.7688

Compare expression of checked genes

Lus10021221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.