Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34160 75 / 1e-17 Alba DNA/RNA-binding protein (.1) AT3G04620 75 / 3e-17 DAN1 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1) AT1G29250 74 / 5e-17 Alba DNA/RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022212 [exp] 291 / 4e-102 AT2G34160 107 / 4e-30 Alba DNA/RNA-binding protein (.1) Lus10005531 [exp] 78 / 2e-18 AT3G04620 194 / 2e-64 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1) Lus10006564 [exp] 78 / 2e-18 AT3G04620 189 / 2e-62 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1) Lus10019423 [exp] 73 / 9e-17 AT2G34160 208 / 1e-70 Alba DNA/RNA-binding protein (.1) Lus10043279 [exp] 73 / 9e-17 AT2G34160 208 / 1e-70 Alba DNA/RNA-binding protein (.1) Lus10002901 [exp] 64 / 2e-13 AT2G34160 180 / 1e-59 Alba DNA/RNA-binding protein (.1) Lus10002027 [exp] 64 / 2e-13 AT2G34160 193 / 6e-65 Alba DNA/RNA-binding protein (.1) Lus10019424 [exp] 52 / 4e-08 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G042900 [exp] 80 / 3e-19 AT3G04620 179 / 2e-58 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1) Potri.005G056000 [exp] 76 / 1e-17 AT3G04620 177 / 8e-58 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1) Potri.018G029300 [exp] 74 / 4e-17 AT1G29250 180 / 1e-59 Alba DNA/RNA-binding protein (.1) Potri.006G252000 [exp] 74 / 4e-17 AT1G29250 164 / 2e-53 Alba DNA/RNA-binding protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021222 pacid=23171417 polypeptide=Lus10021222 locus=Lus10021222.g ID=Lus10021222.BGIv1.0 annot-version=v1.0 ATGGAAGGTCTGGCGCTTATTCTTCCACAGCAGGATTCCGATAGTCAGATTCATGATGGCGCCACCGAGAACGAGGCCACTAACGGCGAGATGACGCTCG TCTACCCCGCCGCTGCCGCCGCGACAGTCCCAGAGGTCTCCGGCGATCTACCCATCGTCAACACTGACGAAGTCGTTGTGACTTTTGCTGCTGAAGTCGC TGGAGAAAGTGAGAAGAAGAAGGCAAACAAGAGGAGGGAGCATCCGATTAAAGTGTCCAACACCAAGAACCCCTTCGTCTTCTATCTCAATCTCGCCAAG AGGCACATCAAGCAGCACAACCACGTAGAGCTCTCTGCTCTTGGAATGGGTATCAAGATGTCTAGCGTTGAAAGCATGGATAGTGACACTGGGCGCGTAA TTCAGAAGGCTAAGATTGAGATTCTGATGGAGAAGGCTGAGAAACCTGAGGAGCCCACTAGCTATGCGCCTATTACCATCTCCAAGGCTGCATCTTTGCT GGCGGTGAAGAGCATCTGA
AA sequence Show only first row Show all	>Lus10021222 pacid=23171417 polypeptide=Lus10021222 locus=Lus10021222.g ID=Lus10021222.BGIv1.0 annot-version=v1.0 MEGLALILPQQDSDSQIHDGATENEATNGEMTLVYPAAAAATVPEVSGDLPIVNTDEVVVTFAAEVAGESEKKKANKRREHPIKVSNTKNPFVFYLNLAK RHIKQHNHVELSALGMGIKMSSVESMDSDTGRVIQKAKIEILMEKAEKPEEPTSYAPITISKAASLLAVKSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10021222 [exp]	0	1
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Lus10004371 [exp]	2.4	0.8247
AT2G15220			Plant basic secretory protein ...		Lus10014111 [exp]	2.4	0.7800
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10043266 [exp]	3.5	0.8052
AT1G31790			Tetratricopeptide repeat (TPR)...		Lus10037287 [exp]	5.5	0.7285
AT2G28085			SAUR-like auxin-responsive pro...		Lus10016130 [exp]	15.6	0.8246
AT3G27110			Peptidase family M48 family pr...		Lus10035210 [exp]	15.7	0.7792
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10004322 [exp]	17.7	0.7365
AT1G11340			S-locus lectin protein kinase ...		Lus10013247 [exp]	18.5	0.7097
AT1G20925			Auxin efflux carrier family pr...		Lus10004287 [exp]	21.2	0.7162
					Lus10034684 [exp]	24.7	0.6982

Compare expression of checked genes

Lus10021222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.