Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23090 202 / 3e-62 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G04630 142 / 1e-39 WDL1 WVD2-like 1 (.1.2.3) AT1G54460 142 / 3e-39 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G28646 119 / 8e-32 WVD2 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT2G35880 120 / 2e-30 TPX2 (targeting protein for Xklp2) protein family (.1) AT4G32330 119 / 4e-30 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT2G25480 118 / 1e-29 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G70950 92 / 3e-20 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G01710 47 / 1e-05 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022213 [exp] 585 / 0 AT3G23090 220 / 2e-68 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10005533 [exp] 130 / 5e-35 AT1G54460 187 / 3e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10006563 [exp] 128 / 3e-34 AT1G54460 187 / 2e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10042543 [exp] 128 / 3e-34 AT1G54460 176 / 1e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10022003 [exp] 128 / 5e-34 AT1G54460 172 / 3e-51 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10002915 [exp] 125 / 2e-32 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10016193 [exp] 120 / 4e-30 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10000016 [exp] 114 / 4e-30 AT5G28646 137 / 3e-41 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10029355 [exp] 120 / 6e-30 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G162800 [exp] 329 / 6e-111 AT3G23090 214 / 1e-66 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.010G076200 [exp] 316 / 1e-105 AT3G23090 185 / 5e-55 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.005G055900 [exp] 169 / 3e-49 AT1G54460 207 / 4e-64 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.013G042800 [exp] 163 / 7e-47 AT1G54460 176 / 5e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.006G254400 [exp] 126 / 2e-32 AT4G32330 288 / 2e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.006G200400 [exp] 120 / 3e-30 AT2G35880 168 / 1e-46 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.018G027500 [exp] 119 / 9e-30 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.016G066600 [exp] 117 / 5e-29 AT2G35880 149 / 5e-40 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G129300 [exp] 91 / 1e-19 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G113000 [exp] 76 / 1e-14 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [flax] [poplar] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Lus10021223 pacid=23171370 polypeptide=Lus10021223 locus=Lus10021223.g ID=Lus10021223.BGIv1.0 annot-version=v1.0 ATGGAAATCAGCGTGGACAAGCAGCATGATTGTGAAATTGCTCATCTGAATGGAACTCCCCATGATTTAGATCATCCTGCTATCCCCAATCATGACGTAG CACTTGATTCCTATGAGGGAGTCAGTGTGGACTCTGAACAACAGAGTGATGAAGGGAGCACTGAGTCAAAGGACTATGAAGTGAAAGAATGCACAACTGA AACTATAATTGGGAGTACTGAAATTTCCATTGCTTACCAAAGTAAGGACGATCATTCTGCAGCAAATTCAAACTTTGAGGCTGGTTTGGAGGAGAAAGTC AAATCAGAAACCAAGGCGTCAAGGGATGAGAACAAGTCACATAGTTCACCTAAGAAACATCCAAGCAAGTCTGGAGTTGCTCGAGCGAAGTACACTGTTC CTAGACCATTTGCCCTAGCTACTGAAAAGCGCGCATCATCCGGACCTCGTCCTTCTGCAACATGCGCTAAAGCTGGCGTGAGTAAACAATCTAAAGGAAA CAGAGTGCTCCAACAAAATACGTTAAAACAGAATCAGCCTCTTTCAGTAGCAAGAAGGCCATTGCAACCGAACAACAAGAAGCATCCTGGTGAAGAAGAT TCTTGTTCTGTCACTTCCTCCACGGGAACTTCTGTACAGAAAATGAAGACAAAATCAGTTATTGCATCACCTCCGACATTCAGATGCACTCAACGAGCCG AGAAACGCAAGGAGTTTTACTCAAAATTAGAGGAAAAATACCAAGCTCTGGAGTCTGAGAAGACCCAAAATGAAGCCAGAACAAAGGAAGAAATGGAGGC AGCTATCAAGCAATTGAGAAAGAGTTTAACGTTCAAGGCCAACCCAATGCCAAGTTTCTACCATGAGGGTCCACCACCAAAGATCGAGCTTAAAAAGGTG GCACCAACTCGTGCAAAATCACCAAAGTTGGGTAGGAATAAGAGCACTGGTGTTGATGCAAAGACTCCATCCCAAGCCAAAGCAGTTCCCAATCATCCAG GTCATTCCGAAGAAGACGAAGACAGTCGTCTGGAAGAGCCAAGTGGAGCTATTCCATTGGAGGCGAATCGAAACAACATGGCAATCGTCGTTTGA
AA sequence Show only first row Show all	>Lus10021223 pacid=23171370 polypeptide=Lus10021223 locus=Lus10021223.g ID=Lus10021223.BGIv1.0 annot-version=v1.0 MEISVDKQHDCEIAHLNGTPHDLDHPAIPNHDVALDSYEGVSVDSEQQSDEGSTESKDYEVKECTTETIIGSTEISIAYQSKDDHSAANSNFEAGLEEKV KSETKASRDENKSHSSPKKHPSKSGVARAKYTVPRPFALATEKRASSGPRPSATCAKAGVSKQSKGNRVLQQNTLKQNQPLSVARRPLQPNNKKHPGEED SCSVTSSTGTSVQKMKTKSVIASPPTFRCTQRAEKRKEFYSKLEEKYQALESEKTQNEARTKEEMEAAIKQLRKSLTFKANPMPSFYHEGPPPKIELKKV APTRAKSPKLGRNKSTGVDAKTPSQAKAVPNHPGHSEEDEDSRLEEPSGAIPLEANRNNMAIVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23090			TPX2 (targeting protein for Xk...		Lus10021223 [exp]	0	1
AT5G50090			unknown protein		Lus10043461 [exp]	2.4	0.8998
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10024183 [exp]	2.4	0.8868
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033981 [exp]	2.8	0.8640
AT5G26780		SHM2	serine hydroxymethyltransferas...		Lus10028218 [exp]	4.9	0.8946
AT2G40070			unknown protein		Lus10037838 [exp]	8.8	0.8392
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10034472 [exp]	9.8	0.8016
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10011847 [exp]	10.8	0.7830
AT4G23500			Pectin lyase-like superfamily ...		Lus10017517 [exp]	11.2	0.8317
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10013032 [exp]	12.6	0.8582
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10005767 [exp]	15.6	0.8171

Compare expression of checked genes

Lus10021223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.