Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43630 326 / 8e-98 TZP zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022216 [exp] 1109 / 0 AT5G43630 234 / 3e-67 zinc knuckle (CCHC-type) family protein (.1) Lus10022215 [exp] 536 / 0 AT5G43630 42 / 4e-04 zinc knuckle (CCHC-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G076700 [exp] 581 / 0 AT5G43630 234 / 2e-64 zinc knuckle (CCHC-type) family protein (.1) Potri.008G162500 [exp] 544 / 7e-178 AT5G43630 237 / 3e-65 zinc knuckle (CCHC-type) family protein (.1) Potri.008G162150 [exp] 432 / 2e-137 AT5G43630 191 / 1e-50 zinc knuckle (CCHC-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03126 [flax] [poplar] Plus-3 Plus-3 domain
Representative CDS sequence Show only first row Show all	>Lus10021224 pacid=23171358 polypeptide=Lus10021224 locus=Lus10021224.g ID=Lus10021224.BGIv1.0 annot-version=v1.0 ATGAACGATGAGGAGAACAGCATAGCATTTAATGATTTTGGACTGCTTTTGAATTACTCTAATCGATTTATTCAAAGGAGATTGAACAGCGCTGAAGCTT CAGGTGCAGGTACAAATGCAGATCCAACTGTTGGAATGGCATTAAGAGCCAGTGACCCGTTGTCTGAGCTAGTTTGGTCCCCAAGGAAAGGCTTGAGTGT CAAATGTGCTGATCGCAGCTTCTTCGGCAGAAACACATCGAGATCTCGAGATAATATTGTAATGGGTTCAAGCAGTGACACCAAACCTTTGAATGAAGCG GATTCTGTCAGAATGGATGTTAATCTAACAAGTGAAGTTCCTGAAAGACATCATCAGTTCATAAATATCCCTTCAAATGATGTGGAAGCCATGCCATGTT GCGGATCTGGCCATGACCTTAACGCAGCTGAGCACAAATCTGATGTGGCACAGCCCAGGCAAACTTTTCAGGAACCTGTTAAGGTAGTAAGTGATATCGG TGGAGGAAGCACAGAAGTGGGAAAACAAGGGGAATGCAAAGCCAGCAGCTCTAAAATGAAGACTGCAACCTTCTCAGGAAAAGTAGGTGAAGAAGAATCA CCTTGCTCCGTGGAGAAGGATGTTTGTGTAGTTCGTCCACTGGAAAGATTGGAGTCGTCCGATGAGAATGACCCGGGAAGTTCACAGGGTCAAAGTGTTT GCGTTGAGAAAACTAAACTTGTGGTGGCAATATCTACCAAGAGACAAGAGCATCAGGTTGATGAGATTCCTGAAGACGACAGGCTGGCAGTTAAAGAATC TCCCACAAATAGCAGGAGTACAAGAAGGTATCAGAGGAAAGGGAAAGCAAAAGCTTTATCCGCTGGAGTTGTAAATGGGAAGAGTATGGATGATGCAGGA AGTGATAGTGATGAGAGTGTTGAAAGTTGCACAAGTGCTGGGGTTCTATCTAAAGGGAAAAGGAGTTGGAACTTTGAGGAACAGTTAAACAAGAGAGTGA AAAGGCATATCCAAGACACGCCCGGTTCATCATCATCATTGCTTAAACAGGACAGCTCATTTGTAAATTGGATCTCTAACATGGTGAATGGATTCTTGAA AACAACTCAGCAAGAGACACAACCTTCATTTCCACTTATTGTTGGTAACCAAGATCCCGCCTGTACAAATACTGGATTCCAGTCCATTTTTCAGTCCTTA TACTGTCCAAAGAAGATGGCTGGTTTTATGGATCCGGGTCATCAAAGAGAAGGTAGACCGGATAGCCAAATGTGTGACGTTAATGCTACTCCGATAGCCT GTCGTCCAGTGAGTGGTAATATCTTCAAACCATTTCTTCCATCTTCAGACAAACATGGTGATTCTATGCCTAGCATCAATGTAGTAGCTGAGAAAAACAG CTCATTTCAAGCTAAAGATTCATGCAGTTCAGAAAGTTACAAGCAGAGGAATGGAACAGACTTGGACAAAGCAAGAATTAACATTGCTCATAAAGTTGAC CCTTTTGCAAGCACCTGGATAACTCGGTTTACACCGAAATCTTTTGCTTGTCCAGCAGACCAAGGTGCGGTGGTCTCTAACAAGAGCACAGGAGAGCTTC ATGCCTGTTCCCCTGAGAGAATGCCAGCCAAATCTCACTTGCAAAACCTTCTTAATTCTTCCAAAGCGCGCTCAATAATGGAGACTGATGAGCAATCACA TGTGAAACCTTGTTCTACTAGTGTGGATGCTTCATTTAGTTTCTATAAAGTGAAGAGCCACCTTGGCGAGACTTCCTCTAGTAAACTGAATCCGATCCCA CCTTCGCAACGACTCACGAATTCAGATGCAATGGCTTCTGTGTTTGCAAGGAGGTTGGATGCCCTTAAACACATCATTCCCTCAGATGGTGGTGTTTTGA ACGATAAAGCTCCTTCGGCTATGATCTGTTTCTTTTGTGGCACTAGAGGTCACCATTTACGAGATTGTTCGGAGATCACTGATTGTGAGCTTGAGGACCT CTTGAGGAACATTACTTCATATGAAGGAAGAGAAGAGCCGCCATGTTTCTGCATCAGATGCTTTCAGCTCAATCATTGGGCTGTTGCATGCCCTAGTGCG CCAGTCAGGGTAAGGCTTCAAGAAGAATATGACACCCCGAAACTCACTGGCATTGGCGCAGTCCAAACACATCTGAATTCAAGAAAGGAAGATAGCAAAA GGTTGTTAGACAGCAGGTCTGGCCAATATCCAGTTGCCAGTGGGACTACAGCTTGTGGAATGAAGAACAATATGTTCTATGAGACCACCAGTACTAGTAG AAAACTGCTAGGTGCTGCTTCAAGCTCTGGGGCAACCAAATTGAAGGGTGCTCAGATGCATCCCTTGATCAAGTCCGACATTGTAAATGCTCCGAAGGGA ATTCGTGACGTTATAAAAAGCCTACGTTTGTCTCGGACAGACATACTAAGATGGATGAATTCTGCATTGCCAATCTCACAGCTTGATGGTTTTTACCTTC GGCTGCGGCTAGGAAAATGGCAAGCTGGAGTTGGGGGAAGTGGATACCATGTAGCTTGCATAACAAGTGGAGAAGGGACGAGCGGATCACAACCAAAGTC CAGAAATTGTACGAGTGGATCGCAGTCCAACTCCAGAAGTTGTGTACCTGTAGATGTTGGTGGCGTCAGATGTCTAGTGGAATCTCAGTACGTCTCCAAC AATGATTTCCTCGAGGATGAGCTCATGGCATGGTGGTCTGCAACATTGAAGGGTAACAAGGTACCATGTGAAGAAGAGTTGAGACTGAAGCTTAAAGATA AGCAAAGGTTGGGGCTTTGA
AA sequence Show only first row Show all	>Lus10021224 pacid=23171358 polypeptide=Lus10021224 locus=Lus10021224.g ID=Lus10021224.BGIv1.0 annot-version=v1.0 MNDEENSIAFNDFGLLLNYSNRFIQRRLNSAEASGAGTNADPTVGMALRASDPLSELVWSPRKGLSVKCADRSFFGRNTSRSRDNIVMGSSSDTKPLNEA DSVRMDVNLTSEVPERHHQFINIPSNDVEAMPCCGSGHDLNAAEHKSDVAQPRQTFQEPVKVVSDIGGGSTEVGKQGECKASSSKMKTATFSGKVGEEES PCSVEKDVCVVRPLERLESSDENDPGSSQGQSVCVEKTKLVVAISTKRQEHQVDEIPEDDRLAVKESPTNSRSTRRYQRKGKAKALSAGVVNGKSMDDAG SDSDESVESCTSAGVLSKGKRSWNFEEQLNKRVKRHIQDTPGSSSSLLKQDSSFVNWISNMVNGFLKTTQQETQPSFPLIVGNQDPACTNTGFQSIFQSL YCPKKMAGFMDPGHQREGRPDSQMCDVNATPIACRPVSGNIFKPFLPSSDKHGDSMPSINVVAEKNSSFQAKDSCSSESYKQRNGTDLDKARINIAHKVD PFASTWITRFTPKSFACPADQGAVVSNKSTGELHACSPERMPAKSHLQNLLNSSKARSIMETDEQSHVKPCSTSVDASFSFYKVKSHLGETSSSKLNPIP PSQRLTNSDAMASVFARRLDALKHIIPSDGGVLNDKAPSAMICFFCGTRGHHLRDCSEITDCELEDLLRNITSYEGREEPPCFCIRCFQLNHWAVACPSA PVRVRLQEEYDTPKLTGIGAVQTHLNSRKEDSKRLLDSRSGQYPVASGTTACGMKNNMFYETTSTSRKLLGAASSSGATKLKGAQMHPLIKSDIVNAPKG IRDVIKSLRLSRTDILRWMNSALPISQLDGFYLRLRLGKWQAGVGGSGYHVACITSGEGTSGSQPKSRNCTSGSQSNSRSCVPVDVGGVRCLVESQYVSN NDFLEDELMAWWSATLKGNKVPCEEELRLKLKDKQRLGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10021224 [exp]	0	1
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10022215 [exp]	1.0	0.8843
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031716 [exp]	6.8	0.8467
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10022216 [exp]	8.9	0.7896
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Lus10006780 [exp]	11.9	0.7598
AT5G19010		ATMPK16	mitogen-activated protein kina...		Lus10021945 [exp]	13.2	0.7761
AT4G36530			alpha/beta-Hydrolases superfam...		Lus10028315 [exp]	14.5	0.7898
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10037694 [exp]	17.9	0.8063
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10011696 [exp]	20.3	0.7599
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10015138 [exp]	24.0	0.8201
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10023210 [exp]	28.1	0.8198

Compare expression of checked genes

Lus10021224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.