Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06750 54 / 3e-08 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G30630 52 / 9e-08 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G04280 45 / 3e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021884 [exp] 70 / 6e-14 AT2G30630 224 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041167 [exp] 67 / 8e-13 AT2G30630 524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10033855 [exp] 59 / 7e-10 AT2G30630 804 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014744 [exp] 59 / 9e-10 AT2G30630 793 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G043000 [exp] 56 / 6e-09 AT1G06750 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G220000 [exp] 53 / 7e-08 AT1G06750 803 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G162000 [exp] 48 / 3e-06 AT1G04280 549 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G162400 [exp] 42 / 0.0004 AT1G04280 491 / 4e-170 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021225 pacid=23171390 polypeptide=Lus10021225 locus=Lus10021225.g ID=Lus10021225.BGIv1.0 annot-version=v1.0 ATGTACAACGATAGTGGCGGAGCTGACCTCAAGGATCGTGCAAAATCGCTGTGCTCGCAGCTTGTGGAGGAGCTGGAGAGGTGCATTTTAAGCTACCTCG CCTTCCACTGGAACCACGCCGCTTCTCTCGTAACTCAGGTGATAAACGAAGAGTCGTCGGAAAAGAAGGGGAAGCTGAAAAGCATGGTAATGGCTGCCAC CAGCGTTACCGGAGAGGGAGACCTTCTCCATGAACCACTAATAACTCCGAACTACCACTCCTATGATATTGGAACCCCTTCATTGCTGACCAAAGCTGGT TACTTTGACATAGAGGAATGGACTTTACCCACCTTTTCAGAAACTGTCGATTGGAAATTGGAGATATTAAATCCCCCCAAACCCCTGAGTTATGACCCTG GCATCACCGTACCCAAGGTGGATTTTTCTCCCCAACCAGTCAAATCGGAGATAGAACGCCTTTACTCTCCACTGAGTGACCGTACTGGTGACAAGAGCAC CTCTCAGTCTACAAATTTTCAACTCCTAGATAAGTGGAGCCATAACTCACTGAGCAGAGACATCCCCTCTATCGGAGGAATCATTAACACGTCTCTGACT GTTGAAGCTAGTGACCTCTATTCAAGGGAAGATCATGACCTCAGCTCCGGTAAAACACATCCCATCTATCACTCGACACTGAATCCCCCCAGCATCTCCT CCCAAGAATAA
AA sequence Show only first row Show all	>Lus10021225 pacid=23171390 polypeptide=Lus10021225 locus=Lus10021225.g ID=Lus10021225.BGIv1.0 annot-version=v1.0 MYNDSGGADLKDRAKSLCSQLVEELERCILSYLAFHWNHAASLVTQVINEESSEKKGKLKSMVMAATSVTGEGDLLHEPLITPNYHSYDIGTPSLLTKAG YFDIEEWTLPTFSETVDWKLEILNPPKPLSYDPGITVPKVDFSPQPVKSEIERLYSPLSDRTGDKSTSQSTNFQLLDKWSHNSLSRDIPSIGGIINTSLT VEASDLYSREDHDLSSGKTHPIYHSTLNPPSISSQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06750			P-loop containing nucleoside t...		Lus10021225 [exp]	0	1
AT1G04280			P-loop containing nucleoside t...		Lus10021226 [exp]	9.1	0.8201
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Lus10032362 [exp]	9.5	0.7297
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10037325 [exp]	11.7	0.7772
AT2G41705			camphor resistance CrcB family...		Lus10028072 [exp]	13.2	0.7697
AT1G34770			unknown protein		Lus10033452 [exp]	15.4	0.7442
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10032965 [exp]	16.3	0.7518
AT4G30900			DNAse I-like superfamily prote...		Lus10036263 [exp]	16.4	0.7334
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Lus10029661 [exp]	18.5	0.6919
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10016846 [exp]	33.4	0.6804
AT5G56580		ANQ1, ATMKK6	ARABIDOPSIS THALIANA MAP KINAS...		Lus10034986 [exp]	35.2	0.7450

Compare expression of checked genes

Lus10021225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.