Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30630 390 / 5e-133 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G04280 390 / 8e-133 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G06750 377 / 6e-128 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022217 [exp] 552 / 0 AT1G04280 416 / 2e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10041167 [exp] 434 / 2e-150 AT2G30630 524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021885 [exp] 406 / 5e-140 AT2G30630 442 / 7e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10033855 [exp] 385 / 1e-130 AT2G30630 804 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014744 [exp] 382 / 2e-129 AT2G30630 793 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021884 [exp] 117 / 7e-30 AT2G30630 224 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G162000 [exp] 429 / 3e-148 AT1G04280 549 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G043000 [exp] 390 / 4e-133 AT1G06750 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G220000 [exp] 384 / 5e-131 AT1G06750 803 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G162400 [exp] 379 / 1e-128 AT1G04280 491 / 4e-170 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF06414 [flax] [poplar] Zeta_toxin Zeta toxin
Representative CDS sequence Show only first row Show all	>Lus10021226 pacid=23171393 polypeptide=Lus10021226 locus=Lus10021226.g ID=Lus10021226.BGIv1.0 annot-version=v1.0 ATGACCGACAGGGAGCGAAGGTTTGAGAGGGTCAGTAAGAGTTTAAAGGTGACGAGGGTGTTCTCCACTTTAGTTGAGGAGATGAAAGCAATCGGAATAA ATAATAGTGATTGTCAAGCCCACCGCAACGACGTTATGATCCCTGCCGCCCATTGCGACCGGAGCCCTGTCCTTCTCTTGATGGGCGGTGGCATGGGTGC CGGCAAGAGCACCGTCATCAAGGACATCCTGAAAGAGTCATTTTGGGGTGGGGCAGCTGCAAACGCCGTCGTAGTGGAGGCAGATGCGTTCAAGGAGTCC GATGTTATTTACAAAGCTCTCAACTCAATGGGACACCACGACGACATGCTTCCAACCTCTGAACTCGTTCACCAATCGTCAACTGATGCGGCGTCGTCGC TACTAGTGACGGCACTTAACGAAGGGCGGGACGTGATAATGGACGGCACCTTGTCCTGGGAGCCATTCGTGGAGCAAACCATCGAGATGGCACGTAACGT CCACAAACGCCGTTACCGAATGGGAGTTGGGTACAAGGTGGACGAAAACGGTAGTACCGTAACAGAAAACTACTGGGAACCAGCAGACTATGATGATCAA GTAAATAATGGAAATGGAGAAATGATAATGGCAGCATTATTATTAACAAAGAGACCTTACAGAATCGAGATGGTTGGTGTGGTTTGCGACGCATACCTAG CCGTTGCTAGAGGAATCAGGAGAGCTATAATAACGGGGAGGGCAGTGAGGGTAAATTCACAGCTGAAATCCCACAAGAGATTCGCGGATGCGTTCCCGAG ATACTGTCAACTTGTGGATAAGGCCAGACTTTACTGCACAAACAGCCTAGGAGGTCCCCCAAAGTTGATAGCTAGGAAGGATGGCGGGGAGAACACGATG CTGATTGATCCAGAACGTTTTAAATGCTTGGGAAATTTGGCGAGGCTGAATCCTAATGCAGAATCTGTGTATCAACTTTACGGTAAAACTAGCACTATTC ACGAGCCAGGATCGGTTTGGAAACAAGTTGTTTTTAACCCTTCGAGGCCCAACATTCAGGAAGAGCTCAAAATCGCCATCCAACAGATTGAAACCACGTC AAGATAG
AA sequence Show only first row Show all	>Lus10021226 pacid=23171393 polypeptide=Lus10021226 locus=Lus10021226.g ID=Lus10021226.BGIv1.0 annot-version=v1.0 MTDRERRFERVSKSLKVTRVFSTLVEEMKAIGINNSDCQAHRNDVMIPAAHCDRSPVLLLMGGGMGAGKSTVIKDILKESFWGGAAANAVVVEADAFKES DVIYKALNSMGHHDDMLPTSELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWEPFVEQTIEMARNVHKRRYRMGVGYKVDENGSTVTENYWEPADYDDQ VNNGNGEMIMAALLLTKRPYRIEMVGVVCDAYLAVARGIRRAIITGRAVRVNSQLKSHKRFADAFPRYCQLVDKARLYCTNSLGGPPKLIARKDGGENTM LIDPERFKCLGNLARLNPNAESVYQLYGKTSTIHEPGSVWKQVVFNPSRPNIQEELKIAIQQIETTSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04280			P-loop containing nucleoside t...		Lus10021226 [exp]	0	1
AT5G09430			alpha/beta-Hydrolases superfam...		Lus10033451 [exp]	2.2	0.9211
AT4G27745			Yippee family putative zinc-bi...		Lus10033226 [exp]	3.0	0.8915
AT4G09890			Protein of unknown function (D...		Lus10006799 [exp]	4.9	0.9003
AT3G58040		SINAT2	seven in absentia of Arabidops...		Lus10013739 [exp]	5.0	0.8803
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10019177 [exp]	7.7	0.8759
AT1G06750			P-loop containing nucleoside t...		Lus10021225 [exp]	9.1	0.8201
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10022883 [exp]	9.2	0.8864
AT5G01790			unknown protein		Lus10029060 [exp]	9.5	0.8794
					Lus10041677 [exp]	10.4	0.8672
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039550 [exp]	11.2	0.8776

Compare expression of checked genes

Lus10021226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.