Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66040 64 / 7e-14 STR16 sulfurtransferase protein 16 (.1.2) AT4G35770 63 / 8e-13 ATSEN1, DIN1, SEN1 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) AT5G66170 50 / 3e-08 STR18 sulfurtransferase 18 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005635 [exp] 248 / 3e-85 AT5G66040 144 / 1e-44 sulfurtransferase protein 16 (.1.2) Lus10012566 [exp] 120 / 2e-35 AT5G66040 129 / 1e-39 sulfurtransferase protein 16 (.1.2) Lus10041525 [exp] 109 / 3e-29 AT5G14030 216 / 8e-70 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Lus10028390 [exp] 81 / 6e-20 AT4G35770 182 / 3e-59 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Lus10041843 [exp] 79 / 1e-18 AT4G35770 182 / 6e-59 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Lus10041894 [exp] 42 / 3e-05 AT5G66170 120 / 1e-35 sulfurtransferase 18 (.1.2.3) Lus10041895 [exp] 40 / 0.0002 AT5G66170 116 / 3e-33 sulfurtransferase 18 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G014900 [exp] 83 / 1e-20 AT4G35770 151 / 8e-47 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Potri.005G106400 [exp] 70 / 4e-15 AT4G35770 199 / 1e-64 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Potri.005G111200 [exp] 56 / 2e-10 AT2G17850 162 / 5e-52 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.014G131300 [exp] 50 / 3e-08 AT2G21045 204 / 2e-68 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021227 pacid=23178289 polypeptide=Lus10021227 locus=Lus10021227.g ID=Lus10021227.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCTTCGGCTTCTCTCCTTCTAAGGTTCCAGAACCCTTCCATCTCTGGGCGTCTCCGGCCGTCAATCCGAATGGCGTGTCAGGTCTCGCAAG GGAGAGACATTAGAATCGCCAACTTTGGGTGTGTTTTTCCTATGCGTTCTGCCTCCATGCTTTTCCAGGCGTTTAATTTCAATCAATCGATGTTCAGTAC AATAGCTAATGAACGAACTCAGCCGCCGTCACCGAGTTCGGTGGCTGCTCCGGCAGCATACCAGCTCTTGGGAAAAGGGCATATGTATTTAGATGTCAGA ACTTGTGAGGAGTTCAATGCAGGTCATCCAACTGGAGCTAGTGGAAGGAGGTCACTCATGGCTGCAGCTGATATGCAAACTGCTGGGTTTACAAGTGTGG TTGATGTTGCTGGTGGCTATAAGTCGTGGATTCAAAATGGACTACCCACGACAACTAAATAG
AA sequence Show only first row Show all	>Lus10021227 pacid=23178289 polypeptide=Lus10021227 locus=Lus10021227.g ID=Lus10021227.BGIv1.0 annot-version=v1.0 MAAASASLLLRFQNPSISGRLRPSIRMACQVSQGRDIRIANFGCVFPMRSASMLFQAFNFNQSMFSTIANERTQPPSPSSVAAPAAYQLLGKGHMYLDVR TCEEFNAGHPTGASGRRSLMAAADMQTAGFTSVVDVAGGYKSWIQNGLPTTTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10021227 [exp]	0	1
AT2G20030			RING/U-box superfamily protein...		Lus10009511 [exp]	4.7	0.9141
AT3G53990			Adenine nucleotide alpha hydro...		Lus10021501 [exp]	5.7	0.9217
AT4G21690		ATGA3OX3	ARABIDOPSIS THALIANA GIBBERELL...		Lus10008100 [exp]	6.3	0.9168
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	8.4	0.9218
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032745 [exp]	11.3	0.9282
AT5G19970			unknown protein		Lus10019451 [exp]	13.0	0.9181
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Lus10011569 [exp]	14.0	0.9178
AT4G12240	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10024570 [exp]	14.4	0.8838
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10036251 [exp]	16.9	0.9184
AT1G68710			ATPase E1-E2 type family prote...		Lus10035068 [exp]	17.2	0.9206

Compare expression of checked genes

Lus10021227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.