Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76110 332 / 2e-113 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G04880 210 / 2e-64 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT3G13350 179 / 1e-53 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G55650 149 / 6e-42 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT2G17410 55 / 4e-08 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2) AT1G76510 50 / 9e-07 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) AT1G20910 49 / 2e-06 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005636 [exp] 367 / 4e-127 AT1G76110 273 / 2e-90 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10016671 [exp] 219 / 1e-67 AT1G04880 365 / 5e-123 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10007127 [exp] 218 / 3e-67 AT1G04880 376 / 3e-127 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10008495 [exp] 49 / 7e-06 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10001618 [exp] 47 / 1e-05 AT2G17410 395 / 4e-129 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10022981 [exp] 47 / 2e-05 AT2G17410 395 / 1e-128 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10016045 [exp] 43 / 0.0003 AT1G76510 374 / 1e-126 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G246700 [exp] 344 / 5e-118 AT1G76110 350 / 2e-120 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.017G055200 [exp] 236 / 7e-74 AT1G04880 364 / 3e-122 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.001G315200 [exp] 213 / 1e-65 AT1G04880 376 / 6e-128 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.011G168800 [exp] 201 / 3e-62 AT3G13350 307 / 3e-104 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.011G145450 [exp] 57 / 8e-09 AT2G17410 423 / 3e-140 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.001G456500 [exp] 53 / 1e-07 AT2G17410 420 / 3e-139 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.004G208900 [exp] 52 / 3e-07 AT2G17410 416 / 6e-137 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.002G003700 [exp] 50 / 9e-07 AT1G76510 451 / 5e-157 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Potri.003G126600 [exp] 48 / 7e-06 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G257300 [exp] 45 / 6e-05 AT1G76510 221 / 1e-68 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01388 [flax] [poplar] ARID ARID/BRIGHT DNA binding domain CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Lus10021228 pacid=23178198 polypeptide=Lus10021228 locus=Lus10021228.g ID=Lus10021228.BGIv1.0 annot-version=v1.0 ATGTCGCCGGCGGCAAAGAAAATGCCGGTGGAGGAACGGTACCCTGCCCCTCTAGCTCCCCATGAGAATGTTGTCAAAGACGCCAAACTCTTTTGGGACA CCCTCCAGAAGTTCCACTCCCAAATCGGAACCAAGTTCATGGTTCCCGTGATTGGAGGCAAAGACCTGGATTTGCATGTCCTCTACGTCGAGGCTACGAG AAGGGGCGGCTACGAAAAGGTGGTTGCGGAGAAGAAATGGAGGGAAGTGGGGATAGTGTTTCAATTCTCACCAACGACCACAAGTGCTTCGTTTGTGCTG AGGAAGCATTACCTTAACATCCTTTACCATTATGAACAAGTTCATTTGTTTAGGATTCAGGGTCCAATTTTTCATCCAACTGCAACATTTCCTGTGAATG GATCTTCTTCAAACAGGTCTGAATTGGACATTGTGGAATATCCGTCTGCTCCTTTCAGTCCTGCAACAAAACTTCCTGATCTTCCTGCTAAAGAAGGAGG AGGAGGGTCCACATTTACAGCAACGGGGACAATTGAGGCGAAATTCGAGAGTGGATACATAGTCTCAGTGACAGTAGGTTCACAAGTTCTAAGTGGAGTT CTTTACCATCCAGGTCAACAGCCTGCATCTGATTTTGCCCCTACCAGCAGCAGCACTGCTCTAGTGACCTACAGTCCGAAGAGGTCCCGACTTTACGGCC GAGGGCGGGGCCGGAGCAGGAGGAGAGGCAGCAAAAGGGCAGGAGGAGACCCCAACTATCCTAAACCCAACAGGAGTGGCTACAACTTCTTCTTTGCTGA GAAGCACTACAAGCTCAAGTCCCTGTACCCAAACAGGGAACGAGAGTTCACCAAAATCATTGGACACTCTTGGAGCAATCTCAGTCCAGAGGAGAGAACG GTGTACCAGAACATAGGGAAGCAGGATAAAGAAAGGTACAGGAGGGAACTCAAAGAGTACAAGGAGAAGCTCAAGGGTGTGGAAATTGGGGAGAGCTCTC ATGTGAATGATTTGGATGATTGA
AA sequence Show only first row Show all	>Lus10021228 pacid=23178198 polypeptide=Lus10021228 locus=Lus10021228.g ID=Lus10021228.BGIv1.0 annot-version=v1.0 MSPAAKKMPVEERYPAPLAPHENVVKDAKLFWDTLQKFHSQIGTKFMVPVIGGKDLDLHVLYVEATRRGGYEKVVAEKKWREVGIVFQFSPTTTSASFVL RKHYLNILYHYEQVHLFRIQGPIFHPTATFPVNGSSSNRSELDIVEYPSAPFSPATKLPDLPAKEGGGGSTFTATGTIEAKFESGYIVSVTVGSQVLSGV LYHPGQQPASDFAPTSSSTALVTYSPKRSRLYGRGRGRSRRRGSKRAGGDPNYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKIIGHSWSNLSPEERT VYQNIGKQDKERYRRELKEYKEKLKGVEIGESSHVNDLDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76110	ARID		HMG (high mobility group) box ...		Lus10021228 [exp]	0	1
AT1G76110	ARID		HMG (high mobility group) box ...		Lus10005636 [exp]	3.6	0.8582
AT2G15020			unknown protein		Lus10013880 [exp]	4.8	0.9038
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004786 [exp]	7.9	0.8950
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10015138 [exp]	11.5	0.8886
AT5G10770			Eukaryotic aspartyl protease f...		Lus10038732 [exp]	14.8	0.8708
					Lus10026628 [exp]	16.5	0.8648
AT3G52740			unknown protein		Lus10020614 [exp]	22.1	0.8765
AT2G30300			Major facilitator superfamily ...		Lus10026422 [exp]	22.4	0.8633
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10039843 [exp]	23.2	0.8644
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10008895 [exp]	25.9	0.8610

Compare expression of checked genes

Lus10021228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.