Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40410 627 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 407 / 4e-131 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 382 / 1e-123 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 384 / 3e-123 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 384 / 3e-123 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11460 378 / 2e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G13770 376 / 1e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 377 / 4e-121 MEF22 mitochondrial editing factor 22 (.1) AT3G46790 375 / 1e-120 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 381 / 2e-120 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005638 [exp] 497 / 3e-174 AT5G40410 305 / 9e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005637 [exp] 480 / 6e-167 AT5G40410 217 / 2e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 412 / 2e-133 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10019735 [exp] 412 / 3e-133 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 395 / 4e-128 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016387 [exp] 384 / 3e-126 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 391 / 8e-126 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010998 [exp] 388 / 4e-125 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 386 / 8e-125 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G014800 [exp] 767 / 0 AT5G40410 749 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 406 / 2e-133 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 402 / 6e-132 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G211400 [exp] 402 / 2e-131 AT3G11460 772 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 406 / 9e-131 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 401 / 5e-130 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 400 / 7e-130 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 398 / 2e-129 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 395 / 2e-128 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 402 / 5e-128 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10021229 pacid=23178307 polypeptide=Lus10021229 locus=Lus10021229.g ID=Lus10021229.BGIv1.0 annot-version=v1.0 ATGGCGACTTCCCTATTCAGAAATGCTTCAACAGTTCTTCCGGTGAAGCTTTTCACCTCGAGGAGATTCTGCAACAGCATTGCTTCTCAGTCTTATCTTC AGCTCCGGCCTTTTTCCAACTTGGACTCCCTTGTTTCTCTTTTGATTGCTGCTGTAACTTCGTCTGCATCGGTCCCTCACTGCCGAGCGCTTCATTGCAG GGTAATTAAATCCGTGAATTACAGCCATGGGTTCATCGGTGATCAGTTAGTCTCTGCTTATATAAGGTCAGGTTCCATAGGAGACGCACATGACCTGTTC GACGAATTGCCTGACAAAGACTCTGCCTCGTGGAATTCACTCATATCTAGCTTCTCTCGCCGTACGGATCTGGCTAGTTGTTTGACTGCCTTCTTCTTCA TGAAACTTGAAACGGACGTTGAACCCAATGATGGTTCTATTGTTCTATTAATTTCTGCCTGCACTGCAACTGGAACTATGGGTATTGGCCCCTATATTCA TGGGTTTGCATTGAAGTATGGAATGCTTCTGGAGCTGAAAGTTGCTAATGCATTGGTTAACATGTATGGAAAGTCTGGATACTTGGATGCAGCCACTAGA TTGTTCCAGGAAATTCCAGTTCCGAATTTGGTATCCTGGAACTCGGTAATCGCAGTTCATGTTCAAATTGGATCAGCTGATGAAGGGATCGTTCATTTTA TCCGTTTAAGAAGAGCAGGGATTGAACCTGATCAAGCCACAATGTTAACGGTCGTCCAAGCATGTGAAAGCCTTGGTTCAAGAAAGTTGGCTGAGGCGAT CCATGGCTTTGTCTTCCACACAGGTCTGAACTCAAACTTGAGTTTAGCTACTGCATTATTGAGCTTATATTCCAAACTGGGTTCATTAGGTGATTCACAG AAGGTGTTTAGCGAGATCAGAACCCCCGATGCCATAGCCTGGACTGCCATGATTGCAAGTTATGGAATTCATGGTATTGGGAAGGAAGCTGTCAAAAATT TTGAGCTGATGATCAGTGAGGGTGTGGCGCCTGATCATGTTACTTTCACCCACTTGTTGAGTTCTTGCAGCCATGCAGGGCTCCTGCAGGTAGGTAAGAG CTACTTCGAACTCATGTCATCATACTATGGAGTTGAGCCGATGATCGATCACTATTCATGCATGGTCGACCTCTTGGGCCGAGCTGGATTTCTGAACGAT GCTTACCAGCTCATTAGAACCATGCCAATGAAGCCAAATTCTGGTGTTTGGGGGGCTTTAATGGGTGCTTGCAGGAAACATGGTAACATTGAGCTTGGTA AGGAAGTGTTCGACAATTTGTTTGCTTTAGACCCATCAGACTCCAGAAACTACATCTCCTTATCAAATATGTACGCTGCTGCTGGTCTTCTGAACGAAGC TTCCAAGGTGAGGTCACTTATGAAGGAAACAAGTGTGGTCCAGAACCCAGGTTCAAGTTCCATAGAACATGGAAACAAGATCAATGTGTTTGTTTCAGGT GATCAATCTCATCCTCTGAGATTAGAGATATATAACAAGTTGGAAGAAATTGTTTGCAAGATCCGTGGAACTGGTATATCGGCAAAGACAGAGTTCGTAC TACAGGATATTGATAATGACGAGGTGAAAGAGGAGATGATCAACAAACACAGTGAAAAGCTAGCCATTGCATTTGGACTCCTGGTGAATGGTCAAAATGC AATGCCTCTGGTTATAACCAAAAACCTGAGGATATGTGGCGACTGTCATAACTTTGCTAAGGTGGTGTCGAGGATGGAGGATCGTGATATTATTGTCCGA GATACGAAGCGTTTTCACCACTTCTCCAAAGGATCATGCTCTTGCAGAGACTACTGGCTCATGTGTCTAGCTGAACTTAGGTTGTGCATCGTTTTCATCA AAGTGAATTTTGGAAATGGTCTCCCAGCTTGGTCTATCAGCATACTGCCTGACTACAAAACAGAAGTTTACAACACGGCAAAGGTGAGCAGTAGACAGGA AATGAAAATGAGGGATACTTTTGCTCGGCATTCATTGACAGGAGTGCAATGTTGTAACTTCCGTGTTGGTTATATGTCCTAA
AA sequence Show only first row Show all	>Lus10021229 pacid=23178307 polypeptide=Lus10021229 locus=Lus10021229.g ID=Lus10021229.BGIv1.0 annot-version=v1.0 MATSLFRNASTVLPVKLFTSRRFCNSIASQSYLQLRPFSNLDSLVSLLIAAVTSSASVPHCRALHCRVIKSVNYSHGFIGDQLVSAYIRSGSIGDAHDLF DELPDKDSASWNSLISSFSRRTDLASCLTAFFFMKLETDVEPNDGSIVLLISACTATGTMGIGPYIHGFALKYGMLLELKVANALVNMYGKSGYLDAATR LFQEIPVPNLVSWNSVIAVHVQIGSADEGIVHFIRLRRAGIEPDQATMLTVVQACESLGSRKLAEAIHGFVFHTGLNSNLSLATALLSLYSKLGSLGDSQ KVFSEIRTPDAIAWTAMIASYGIHGIGKEAVKNFELMISEGVAPDHVTFTHLLSSCSHAGLLQVGKSYFELMSSYYGVEPMIDHYSCMVDLLGRAGFLND AYQLIRTMPMKPNSGVWGALMGACRKHGNIELGKEVFDNLFALDPSDSRNYISLSNMYAAAGLLNEASKVRSLMKETSVVQNPGSSSIEHGNKINVFVSG DQSHPLRLEIYNKLEEIVCKIRGTGISAKTEFVLQDIDNDEVKEEMINKHSEKLAIAFGLLVNGQNAMPLVITKNLRICGDCHNFAKVVSRMEDRDIIVR DTKRFHHFSKGSCSCRDYWLMCLAELRLCIVFIKVNFGNGLPAWSISILPDYKTEVYNTAKVSSRQEMKMRDTFARHSLTGVQCCNFRVGYMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40410			Tetratricopeptide repeat (TPR)...		Lus10021229 [exp]	0	1
AT2G24960			unknown protein		Lus10026250 [exp]	3.9	0.8777
AT1G17350			NADH:ubiquinone oxidoreductase...		Lus10027384 [exp]	4.9	0.8824
AT1G76480			unknown protein		Lus10006035 [exp]	7.5	0.8830
AT5G36930			Disease resistance protein (TI...		Lus10018972 [exp]	8.9	0.8705
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	13.4	0.8773
AT5G62980		FOLB2	Dihydroneopterin aldolase (.1)		Lus10021252 [exp]	14.1	0.8523
AT1G45150			unknown protein		Lus10002387 [exp]	20.1	0.8386
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10014828 [exp]	22.6	0.8203
					Lus10041093 [exp]	23.7	0.8382
AT3G07610		IBM1	increase in bonsai methylation...		Lus10002051 [exp]	24.8	0.7992

Compare expression of checked genes

Lus10021229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.