Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35750 265 / 7e-91 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT3G10210 180 / 5e-57 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G69340 64 / 1e-11 appr-1-p processing enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005640 [exp] 413 / 2e-149 AT4G35750 260 / 6e-89 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10041841 [exp] 275 / 7e-95 AT4G35750 323 / 7e-114 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10028388 [exp] 266 / 2e-91 AT4G35750 313 / 5e-110 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10035431 [exp] 197 / 1e-63 AT3G10210 353 / 2e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10031044 [exp] 197 / 1e-63 AT3G10210 353 / 3e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10037119 [exp] 63 / 1e-11 AT1G69340 966 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10030413 [exp] 61 / 6e-11 AT1G69340 917 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10036809 [exp] 60 / 2e-10 AT1G69340 971 / 0.0 appr-1-p processing enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G014700 [exp] 266 / 2e-91 AT4G35750 296 / 3e-103 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G246800 [exp] 261 / 2e-89 AT4G35750 282 / 9e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G107300 [exp] 231 / 1e-77 AT4G35750 284 / 1e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.006G043166 [exp] 205 / 2e-66 AT3G10210 359 / 6e-127 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.010G161500 [exp] 63 / 2e-11 AT1G69340 926 / 0.0 appr-1-p processing enzyme family protein (.1) Potri.008G093100 [exp] 62 / 2e-11 AT1G69340 935 / 0.0 appr-1-p processing enzyme family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021230 pacid=23178223 polypeptide=Lus10021230 locus=Lus10021230.g ID=Lus10021230.BGIv1.0 annot-version=v1.0 ATGCCTGCTGCATCTCTCACTCTGTCCTTCTCCGATCAGATAGATCTCCTCGTTAAGCTCCAGGTCTTCAAGCTCCAAGGCCGCGACAAGCGCGGCAACA AAGTCCTCCGCGTCGTCGGCAAGTACTTCCCCGCTCGGATGGTGAGCTTCGATGCGGTAAAGAAGCACTTGGAGGAATCGGTTATCTCGAAATTAGGAGA GAAGCCGTTCTCGGTCGTCTACTTTCACGCCGGTGTCCAAAGGGGCGAGAACTTCCCCGGAATCTCTGCCCTCCGGATGCTATACGACGCCGTTCCTGCG GCTACGAAGAACAATCTGCAATCCGTTTACTTCGTGCATCCAGGAATTCAGGCCAGGCTCTTCTTCGCCACCGTGGGCCGCTTCATTTTCACCGGCGGGC TGTACGAGAAGGTGAAGTACGTGAGCAGGCTGGAGTTCACCTGGGAAGGAGTGAGGAAAGGGGAGATAGAGGTGCCTGAGTTCGTGGTAGAACACGACGA GGAGCTGGAGTATAGGCCGGTGACGACGTTGGATTACGGGATGGAGAGCGATTTCCCGAGGCCGTACAGCGCGGGAGCTAGCATGGATAATCCTATGTCT CTCTACTCTATGCGTTGTATTTCCTAA
AA sequence Show only first row Show all	>Lus10021230 pacid=23178223 polypeptide=Lus10021230 locus=Lus10021230.g ID=Lus10021230.BGIv1.0 annot-version=v1.0 MPAASLTLSFSDQIDLLVKLQVFKLQGRDKRGNKVLRVVGKYFPARMVSFDAVKKHLEESVISKLGEKPFSVVYFHAGVQRGENFPGISALRMLYDAVPA ATKNNLQSVYFVHPGIQARLFFATVGRFIFTGGLYEKVKYVSRLEFTWEGVRKGEIEVPEFVVEHDEELEYRPVTTLDYGMESDFPRPYSAGASMDNPMS LYSMRCIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35750			SEC14 cytosolic factor family ...		Lus10021230 [exp]	0	1
AT3G25570			Adenosylmethionine decarboxyla...		Lus10019146 [exp]	7.1	0.8262
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10010188 [exp]	7.4	0.8274
AT5G12240			unknown protein		Lus10026824 [exp]	17.3	0.8161
AT3G05000			Transport protein particle (TR...		Lus10033832 [exp]	19.3	0.7991
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Lus10041379 [exp]	21.4	0.7984
AT1G01230			ORMDL family protein (.1)		Lus10005980 [exp]	23.7	0.8044
AT5G27830			unknown protein		Lus10020660 [exp]	25.7	0.8143
AT4G35905			unknown protein		Lus10028420 [exp]	28.1	0.8059
AT4G35750			SEC14 cytosolic factor family ...		Lus10005640 [exp]	31.4	0.7843
AT3G23490		CYN	cyanase (.1)		Lus10042087 [exp]	35.4	0.7826

Compare expression of checked genes

Lus10021230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.