Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20370 580 / 0 Pseudouridine synthase family protein (.1) AT1G76120 558 / 0 Pseudouridine synthase family protein (.1.2) AT2G30320 88 / 3e-18 Pseudouridine synthase family protein (.1) AT1G20290 71 / 6e-13 SWI-SNF-related chromatin binding protein (.1) AT5G35400 62 / 4e-10 Pseudouridine synthase family protein (.1.2) AT1G34150 43 / 0.0004 Pseudouridine synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005641 [exp] 937 / 0 AT1G20370 588 / 0.0 Pseudouridine synthase family protein (.1) Lus10026423 [exp] 132 / 4e-33 AT2G30320 459 / 5e-158 Pseudouridine synthase family protein (.1) Lus10042233 [exp] 129 / 4e-32 AT2G30320 447 / 7e-153 Pseudouridine synthase family protein (.1) Lus10022949 [exp] 58 / 9e-09 AT5G35400 489 / 2e-172 Pseudouridine synthase family protein (.1.2) Lus10027594 [exp] 55 / 7e-08 AT5G35400 492 / 1e-173 Pseudouridine synthase family protein (.1.2) Lus10023799 [exp] 47 / 3e-05 AT1G34150 422 / 3e-147 Pseudouridine synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G247000 [exp] 669 / 0 AT1G20370 560 / 0.0 Pseudouridine synthase family protein (.1) Potri.002G014400 [exp] 667 / 0 AT1G20370 562 / 0.0 Pseudouridine synthase family protein (.1) Potri.013G154200 [exp] 89 / 8e-19 AT2G30320 486 / 2e-168 Pseudouridine synthase family protein (.1) Potri.018G147400 [exp] 59 / 5e-09 AT5G35400 488 / 8e-172 Pseudouridine synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF01416 [flax] [poplar] PseudoU_synth_1 tRNA pseudouridine synthase
Representative CDS sequence Show only first row Show all	>Lus10021231 pacid=23178172 polypeptide=Lus10021231 locus=Lus10021231.g ID=Lus10021231.BGIv1.0 annot-version=v1.0 ATGTCCACAACCACCACCTCGGACGACGAAGAAACCGCCTTGAACGTCCCCGGTGACGATCCCAACGCCGCCGCCGGAACCAGAAAGCAGAAGTACAAGC GGCGAAAGATCGCCATATTCTTTGCTTATTGCGGAGTGGGCTACCAAGGGATGCAGAAAAACCCCGGCGCTAAAACCATTGAGGGCGACCTTGAAGAAGC CCTGTTTCGCGCCGGCGCCGTACCGGAACAAGACCGCAACTGTCCGAAGCGATATGACTGGGCTCGTTCGGCGCGTACTGATAAGGGCGTGAGCGCCGTC GGTCAGGTCGTATCCGGGAGATTCTACGTGGATCCTCCGGGGTTTGTGGAGCGGTTGAACTCAGAACTTCCGTCTCAATTTCGCATCTTTGGGTATAAGC GAGTGACTGGGTCGTTTAGTTCGAAGAAGTTCTGTGACAGGAGAAGGTACGTGTATCTTATCCCTGTGTTTGCTCTTGATCCGTCTTCGCATCGTGATAG GGAGAGTGTGCTTGCTAGTCTAGGGTCTGGCTCTGAGCTTGTGAAATGTTTTGAGTGCTCAGAGAGAGGGAGAAAGGTAGTTGGAGCTGTTGGCAATAAA CGTACCTTTGATCCAGAAGCTGCAGCTTCTCAGTCAGGAATTTCATCCAACACCGCCGATGTGAGTGTTGTGGTAGAATCTGTAGTTAGTGATGGCTGTA GTCCAAAGCAACCCGTACTGTCTGCTGAAGCTGTTCCATTGGGAGAAGAAAATGCTATCCCCAAACCTGAAAATGAGACTTTGGTCGATATAGATAATGG ACATGATGGTGATGTTGGGCCAACAGAAACACTGGACAAAGATGTGAATGCTGCTGATGTGATTGGAGAAGAGAAAGTTGAAGCAGGGGACACGGCAGCC AGCTTAGGACCTCCGTTTTGCTACGGGGAGGCAGAGAAGGAAAGGTTCAATAGAATATTGAGTTACTATGTTGGAAGTCACAACTTCCATAACTTCACAA CTAGAACCAAGGCTGAAGACCCTGCAGCTTGGCGGTACATCGTGTCGTTCAATGCAAACACCGTAGTTACCGTTGATGGAATTGATTTTGTAAAGTGTGA GGTTATCGGGCAAAGCTTCATGCTTCACCAGATACGCAAGATGATTGGGGTTGCGGTGGCAATCATGAGGAACTGTGCGCCTGAGTCATTGATAAAAACT GCATTACAAAAGCAGGTTAGGTTGACCGTGCCAACAGCTCCAGAGGTTGGGCTATACTTGGATGAGTGCTTTTTCACATCATATAATCAGAAATGGAAAG ACACGCATGAAGAAGTTTCAATGAAGGCATATGAAGAAGAGGCAGAGGAGTTCAAAATGAAGTACATATATCCTCACATTGCATCCACGGAACACAAGGA AGGAGCTGTGGGCTTGTGGCTGCATTCTCTAAACTATAGAAACTATCCCGATCTCCGTGCTAATGACAACAGAGCCGCAGAACTAGAAGGAGCTGCTGAC GCGAACAATGTTGAGTAA
AA sequence Show only first row Show all	>Lus10021231 pacid=23178172 polypeptide=Lus10021231 locus=Lus10021231.g ID=Lus10021231.BGIv1.0 annot-version=v1.0 MSTTTTSDDEETALNVPGDDPNAAAGTRKQKYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFRAGAVPEQDRNCPKRYDWARSARTDKGVSAV GQVVSGRFYVDPPGFVERLNSELPSQFRIFGYKRVTGSFSSKKFCDRRRYVYLIPVFALDPSSHRDRESVLASLGSGSELVKCFECSERGRKVVGAVGNK RTFDPEAAASQSGISSNTADVSVVVESVVSDGCSPKQPVLSAEAVPLGEENAIPKPENETLVDIDNGHDGDVGPTETLDKDVNAADVIGEEKVEAGDTAA SLGPPFCYGEAEKERFNRILSYYVGSHNFHNFTTRTKAEDPAAWRYIVSFNANTVVTVDGIDFVKCEVIGQSFMLHQIRKMIGVAVAIMRNCAPESLIKT ALQKQVRLTVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEEEAEEFKMKYIYPHIASTEHKEGAVGLWLHSLNYRNYPDLRANDNRAAELEGAAD ANNVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76120			Pseudouridine synthase family ...		Lus10021231 [exp]	0	1
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10018037 [exp]	4.4	0.8887
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10009653 [exp]	6.2	0.8677
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10014680 [exp]	7.4	0.8669
AT1G20370			Pseudouridine synthase family ...		Lus10005641 [exp]	11.4	0.8440
AT5G58370			P-loop containing nucleoside t...		Lus10009919 [exp]	15.2	0.8584
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10021844 [exp]	17.2	0.8210
AT2G41620			Nucleoporin interacting compon...		Lus10039624 [exp]	19.2	0.8679
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10043286 [exp]	21.0	0.8361
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10042033 [exp]	21.9	0.8263
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025131 [exp]	23.7	0.8667

Compare expression of checked genes

Lus10021231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.