Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33680 818 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 450 / 5e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 448 / 4e-146 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 434 / 7e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 444 / 9e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 442 / 1e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 432 / 3e-140 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 425 / 8e-138 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 414 / 9e-134 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 416 / 1e-133 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005643 [exp] 714 / 0 AT2G33680 456 / 8e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 457 / 1e-150 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 452 / 9e-148 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024936 [exp] 449 / 1e-147 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 453 / 3e-147 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 449 / 9e-146 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 440 / 4e-141 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017082 [exp] 437 / 5e-141 AT1G16480 507 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10009269 [exp] 427 / 9e-141 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G006800 [exp] 928 / 0 AT2G33680 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 485 / 2e-159 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 469 / 7e-155 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 470 / 2e-154 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 473 / 5e-154 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 463 / 8e-153 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 445 / 7e-146 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G058900 [exp] 448 / 3e-144 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 443 / 5e-144 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 433 / 8e-141 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10021232 pacid=23178254 polypeptide=Lus10021232 locus=Lus10021232.g ID=Lus10021232.BGIv1.0 annot-version=v1.0 ATGTCGCTTCTTCTTCATCTTCCGTCTCGGCATCGCTCCTTTTTCACATTGCTGCTGGACTGTACTCGCCAGAGAAGCCTCTCCAAGGGAAAGTCGGTAC ACGCCCAGATCGTTAAGAATGTTGATGGTGCTTACTACTGTGTATACACTGTCAACAGTCTAGTTAATTTCTACGCTAAATGTGGTCATCTTGCGAAAGC CAAACTCGTTTTCGATCGTATTCCTCACAAAGATGTGGTTTCCTGGAATTCCCTCATCAATGTCTATTCCAAGATGGGTTCTTCTGGCAGTTTTGTTGTC ATGGAGCTGTTTCAACGCATGAGGGCGGAGAACAACTTGCCGAACGCTCATACTTTTGCCGGTGTGTTTACTTCTGCTTCCAGCTCTGGTTGGGTTTTTG TCGGGGAACAAGCTCAGGCCCTTGCCATAAAAACTTCCGATTTCCACGACGTTTTCGTTGGGAGCTCCCTCGTTAATATGTACTGCAAAGCTGGTCTCGT TCAGGAAGCCCGCAAAGTGTTCGACGGAATGCCTCAGAGAAACGCTGTTTCTTGGTCCACGATGGTTTCTGGGTATGCAAGTCATCGGTTGGTAAAAGAG ACTCTGGAGTTTTTCAAAGTCATGCGCTATGAAGAGGCGGATGTGAATGAGTTTGTGTTCACTAGTGTTCTTAGCGCTTTCGTTACTCCAGAATGGCTTA ACAGTGGCGGTAATACGGTGCATTCTCTTGCTGTCAAGAATGGGCTTGTTGCCTTTGTCTCCGTCTTGAATGCAATTGTTACTATGTACGCGAAATGTGG AGACTTGGAGGGTTCTCTTAAAATGTTTGAGCTGTCAAGTGATAAGGATTCCATCACTTGGTCCGCGATGATCACTGGTTTTGCCCAAAGTGGGGACTCT CAGAAGGCTTTAAAACTCTTCTCAACGATGCATTTTGCTGGGGTTTATCCGAGTGAATATACTGTTGTTGGGGTTCTTAATTCTTGCAGCGATGTGGCTG CTATTGAAGAAGGAAAGCAAGTGCACAGTTTCTTATTAAAATTAGGATTTGAGTCGCAAATGTTTATACTTACAGCTTTGGTTGACATGTATGCCAAATG TGGTCATGTGAAGGATGCACGAAAAGGGTTCAATGCTCTCCCAGACCCTGACATCGTTCTATGGACTTCCATGATTGCAGGATATGTGCAAAATGGGGAG AACGAGGATGGTTTGAGCTTATATGGCGAAATGCGGATGAAAGGTGTCTTGCCGAACGAGCTAACCATGGCTAGTCTGTTGAAAGCTTGCTCCAGGTTAG CTGGTTTAGAACAAGGAAAACAGATTCATTGCTGTATTGTGAAGTACGGATTCACTTTAGAAATGCCCATCGGCAGTGCTCTTTCAACTATGTATGCCAA ATGTGGGTCTCTTGATGATGCAGGCATTGCTTTTAGGAGGATCCCAGAAAGAGATCTACTGTCATGGAATGCGATGATATCTGGACTTTCCCACAACGGA CAAGGTGAGGAAGCTCTGCAGCTCTTCCAAGATATGCGACTCGAGGAAGGTACGAAGCCTGATCACATCACATTCGTGAACATTCTTTCTGCTTGCAGCC ACATGGGAATGGTAGACAGAGCCTGGGCATATTTCAACATGATCTTCAACGAATTTGGCATAGCTCCAACGATCGAGCACTATGCCTGCATGGTTGACGT ACTGAGCCGGGCAGGGCAGTTGAAAGAAGCCAAGGATTTTATAGATTCAGTCCCAATAGATCATGGTTTGTGTTTATGGCGCATTCTATTGAGCGCCTGT CGAAACTATCGCAACTACGAGTTAGGTGCCTATGCAGGCGAGAAGCTAATGGAATTGGGATCGGAAGAATCATCTGCTTATGTACTGTTGTCAAGTATCT ACAATGCCTTGCGTAGACCAAAAGAGGTGGAGAGAATCAGGAGCTTGATGAGAAGTCGAAGAGCGAACAAAGAACCTGGTTGTAGTTGGATTGAGCTTAA GAGCCTCGTCCATGTCTTCGTGGTTGGAGATCAACGGCATCCACAGATTGACGAAATCTGTGGCGAAATTCGTAGATTGTTCAAGCAAATGAAACATGAA GGTTACCACCCTGCACCTGACTTGGCTGCCTAA
AA sequence Show only first row Show all	>Lus10021232 pacid=23178254 polypeptide=Lus10021232 locus=Lus10021232.g ID=Lus10021232.BGIv1.0 annot-version=v1.0 MSLLLHLPSRHRSFFTLLLDCTRQRSLSKGKSVHAQIVKNVDGAYYCVYTVNSLVNFYAKCGHLAKAKLVFDRIPHKDVVSWNSLINVYSKMGSSGSFVV MELFQRMRAENNLPNAHTFAGVFTSASSSGWVFVGEQAQALAIKTSDFHDVFVGSSLVNMYCKAGLVQEARKVFDGMPQRNAVSWSTMVSGYASHRLVKE TLEFFKVMRYEEADVNEFVFTSVLSAFVTPEWLNSGGNTVHSLAVKNGLVAFVSVLNAIVTMYAKCGDLEGSLKMFELSSDKDSITWSAMITGFAQSGDS QKALKLFSTMHFAGVYPSEYTVVGVLNSCSDVAAIEEGKQVHSFLLKLGFESQMFILTALVDMYAKCGHVKDARKGFNALPDPDIVLWTSMIAGYVQNGE NEDGLSLYGEMRMKGVLPNELTMASLLKACSRLAGLEQGKQIHCCIVKYGFTLEMPIGSALSTMYAKCGSLDDAGIAFRRIPERDLLSWNAMISGLSHNG QGEEALQLFQDMRLEEGTKPDHITFVNILSACSHMGMVDRAWAYFNMIFNEFGIAPTIEHYACMVDVLSRAGQLKEAKDFIDSVPIDHGLCLWRILLSAC RNYRNYELGAYAGEKLMELGSEESSAYVLLSSIYNALRRPKEVERIRSLMRSRRANKEPGCSWIELKSLVHVFVVGDQRHPQIDEICGEIRRLFKQMKHE GYHPAPDLAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33680			Tetratricopeptide repeat (TPR)...		Lus10021232 [exp]	0	1
AT5G06400			Pentatricopeptide repeat (PPR)...		Lus10021250 [exp]	2.0	0.9117
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10036490 [exp]	2.2	0.9297
					Lus10028150 [exp]	2.2	0.9011
AT3G61170			Tetratricopeptide repeat (TPR)...		Lus10024936 [exp]	3.7	0.8986
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10040049 [exp]	11.4	0.9091
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10019619 [exp]	12.6	0.9083
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10014113 [exp]	14.0	0.8928
AT4G38890			FMN-linked oxidoreductases sup...		Lus10035460 [exp]	14.4	0.8985
AT1G64310			Tetratricopeptide repeat (TPR)...		Lus10028074 [exp]	15.6	0.8490
AT4G14170			Pentatricopeptide repeat (PPR)...		Lus10036095 [exp]	15.8	0.8620

Compare expression of checked genes

Lus10021232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.