Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38430 516 / 1e-179 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT5G02010 432 / 8e-147 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT5G05940 419 / 1e-140 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT3G55660 384 / 1e-127 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1) AT4G00460 361 / 4e-120 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT1G01700 348 / 1e-114 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT3G24620 347 / 1e-113 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT2G45890 340 / 9e-112 RHS11, ATROPGEF4, ROPGEF4 ROOT HAIR SPECIFIC 11, RHO guanyl-nucleotide exchange factor 4 (.1) AT1G79860 340 / 5e-111 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT4G13240 339 / 1e-110 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005644 [exp] 932 / 0 AT4G38430 520 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10023983 [exp] 489 / 3e-168 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10025101 [exp] 487 / 2e-167 AT4G38430 683 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10009874 [exp] 434 / 7e-147 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10040248 [exp] 430 / 4e-145 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10000399 [exp] 424 / 7e-143 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10021500 [exp] 424 / 3e-141 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10004676 [exp] 421 / 3e-141 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10022601 [exp] 422 / 1e-140 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G247100 [exp] 573 / 0 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.002G014100 [exp] 551 / 0 AT4G38430 592 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.004G179742 [exp] 538 / 0 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.009G140100 [exp] 538 / 0 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.008G062000 [exp] 441 / 4e-149 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.006G092600 [exp] 435 / 6e-147 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.010G196000 [exp] 434 / 8e-147 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.016G104400 [exp] 429 / 2e-143 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.002G159700 [exp] 382 / 4e-128 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.014G084200 [exp] 380 / 2e-127 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [flax] [poplar] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Lus10021234 pacid=23178283 polypeptide=Lus10021234 locus=Lus10021234.g ID=Lus10021234.BGIv1.0 annot-version=v1.0 ATGGGGAGTATTTCGTCTGATGACGACGTCGGTGACCGGTTTGTGCTCGACAGCTACAGCATCAGTGCCGATATCAGCGAGTCAGAGAGCGGTTCCAGCT GCCTGTCCTCGTCCTGCCGCAATTGCGACCGAAGCAGAGGAGGTTCCACTTCCCTCACGTCTTCTTCGTCTGCTCAACTCGCTGAAGCGCTGGAATTCGA TGACCGTTACCCGCCGATCACTCTCATGCCGCCCGTTGTCGGCGGCAGACACGTTGTCTTTCAACCGAAGAAGGCCGCGTCTGAACTTTCTGAAACTGAA TTGATGAAGGAACGATTTGCCAAGCTTCTGTTAGGAGAGGACATGTCAGGTGGAGGGAATGGGGTTTGCACAGCTCTGGCAATCTCCAATGCCATCACTA ACCTTTCTGCTTCTGTATTTGGACAGCTGTGGAAGCTGGAACCGTTACCAGAACAGAAGAAGGCAATGTGGCGGCGTGAGATGGAATGGTTCTTATGTGT AAGTGATTCCATTGTAGAGCTTGTTCCATCGGTTCAAGCTGTTCCTGGAGGTGGCACTTTCGAAGTTATGGTGCCACAACCGCGGTTGGATCTATTTGTA AACGTGCCAGCTCTGAAGAAGCTCGATGCCATGCTTCTCAACGTTCTTGACGGGTTTTCTGATTCGGAGTTTTGTTATGTTGAGCGCGGAATAGCAGTTT CTAGTGGAGATGGTGAGACCAAAAAATTCATGTCTTCCTTGACTTCTGGGACTGAACCATCCTCAGTAAGACTGGAGGAGAAATGGTGGCTGCCGTTTCC TAAAGTTCCTGAAAACGGGCTGTGCGAGGATACGAGGAAGAGATTGCAGCAGTGTAGGGAATGCACCAGTCAGATCCTTAAGGCTGCCATGGCTATCAAT AACCATGTCTTAGCTGAGATGCAAATACCTGCTTCTTACTTGGATAGCCTGCCAAAGAATCCGCAAGCTTGTTTAGGGGAGACGATACACGGCTACTTAA CAGCGGACAATTTCTCTCCCGATATCATCCTTGATTACTTGAACTTATCACCAGAGTTCACCACTCTTGAGGTAGCAAACCGGATCGAAGCTGCTGCACA TACATGGAACCAGAAGTATATTAGGAAGTATATGGGTGGTGGTGGTGGAGCGAGATCAACATGGACTGGTAAATCCAAACACAATACTCCGAAATGTAAA ATGCTGGCAGCACGGGCAGATAATCTATTACGCAGCTTAAGACTCCGGTTTCCTGACCTTCCTCAGACCTCCTTAGATACCACCAAGATTCAACACAACA GGGACGTAGGGCGTGCTATCATCGAGAGCTACTCAAGGGTAATGGAAAGCTTAGCTTTCAACGTGATGGCGAGAATCGAGGACCTTCTATATGTTGACGA TGCCACAAAGCAACGTGCAGCAGAGGCAGCAGCAGAGTCTCTGTACACACAAGGACGGCTTAGCTGTTCGTTTGCCAAACAAAGGTGGATATCACCTAGC CAGTTTACGTTGGACCATCCTGGGGAGTTGGCCAGATTTCCCAACAACGTAAGGAACAGTTCAACAGTTACCAAAGAAGAGCGATGA
AA sequence Show only first row Show all	>Lus10021234 pacid=23178283 polypeptide=Lus10021234 locus=Lus10021234.g ID=Lus10021234.BGIv1.0 annot-version=v1.0 MGSISSDDDVGDRFVLDSYSISADISESESGSSCLSSSCRNCDRSRGGSTSLTSSSSAQLAEALEFDDRYPPITLMPPVVGGRHVVFQPKKAASELSETE LMKERFAKLLLGEDMSGGGNGVCTALAISNAITNLSASVFGQLWKLEPLPEQKKAMWRREMEWFLCVSDSIVELVPSVQAVPGGGTFEVMVPQPRLDLFV NVPALKKLDAMLLNVLDGFSDSEFCYVERGIAVSSGDGETKKFMSSLTSGTEPSSVRLEEKWWLPFPKVPENGLCEDTRKRLQQCRECTSQILKAAMAIN NHVLAEMQIPASYLDSLPKNPQACLGETIHGYLTADNFSPDIILDYLNLSPEFTTLEVANRIEAAAHTWNQKYIRKYMGGGGGARSTWTGKSKHNTPKCK MLAARADNLLRSLRLRFPDLPQTSLDTTKIQHNRDVGRAIIESYSRVMESLAFNVMARIEDLLYVDDATKQRAAEAAAESLYTQGRLSCSFAKQRWISPS QFTLDHPGELARFPNNVRNSSTVTKEER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10021234 [exp]	0	1
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10003822 [exp]	1.0	0.8968
AT1G61667			Protein of unknown function, D...		Lus10020075 [exp]	1.4	0.8964
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Lus10007492 [exp]	6.7	0.8784
AT1G64450			Glycine-rich protein family (....		Lus10003189 [exp]	7.2	0.8577
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10007347 [exp]	9.2	0.8462
AT4G03600			unknown protein		Lus10018599 [exp]	11.2	0.8329
AT1G30910			Molybdenum cofactor sulfurase ...		Lus10007754 [exp]	13.0	0.8232
AT4G38660			Pathogenesis-related thaumatin...		Lus10041899 [exp]	13.4	0.8248
AT4G03600			unknown protein		Lus10039834 [exp]	13.6	0.8359
AT1G32860			Glycosyl hydrolase superfamily...		Lus10017344 [exp]	13.7	0.8251

Compare expression of checked genes

Lus10021234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.