Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76140 1184 / 0 Prolyl oligopeptidase family protein (.1.2) AT1G20380 1134 / 0 Prolyl oligopeptidase family protein (.1) AT1G50380 201 / 6e-55 Prolyl oligopeptidase family protein (.1) AT1G69020 111 / 3e-25 Prolyl oligopeptidase family protein (.1) AT5G66960 76 / 7e-14 Prolyl oligopeptidase family protein (.1) AT4G14570 54 / 5e-07 AtAARE, AARE acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) AT5G36210 43 / 0.0008 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034556 [exp] 1140 / 0 AT1G76140 1056 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10019994 [exp] 1103 / 0 AT1G76140 1008 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10034558 [exp] 615 / 0 AT1G76140 565 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10015387 [exp] 208 / 5e-57 AT1G50380 1096 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032920 [exp] 206 / 1e-56 AT1G50380 1018 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10004631 [exp] 134 / 2e-32 AT1G69020 830 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10026683 [exp] 115 / 3e-26 AT1G69020 785 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032378 [exp] 103 / 1e-22 AT1G69020 372 / 1e-116 Prolyl oligopeptidase family protein (.1) Lus10017568 [exp] 91 / 1e-18 AT5G66960 1124 / 0.0 Prolyl oligopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G247300 [exp] 1224 / 0 AT1G76140 1206 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247400 [exp] 1218 / 0 AT1G76140 1210 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G013900 [exp] 1216 / 0 AT1G76140 1165 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G014000 [exp] 1216 / 0 AT1G76140 1217 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.007G001300 [exp] 206 / 2e-56 AT1G50380 1149 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.010G137801 [exp] 117 / 4e-27 AT1G69020 889 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.007G035900 [exp] 100 / 1e-21 AT5G66960 1087 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.008G160400 [exp] 54 / 3e-07 AT4G14570 971 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Potri.002G128700 [exp] 49 / 9e-06 AT5G36210 1049 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF02897 [flax] [poplar] Peptidase_S9_N Prolyl oligopeptidase, N-terminal beta-propeller domain CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10021235 pacid=23178202 polypeptide=Lus10021235 locus=Lus10021235.g ID=Lus10021235.BGIv1.0 annot-version=v1.0 ATGGGCTCCCTCTCCGCTCTCGACGGTGGAGCCTGCTTGACCTACCCTAAAACCCGCAGGGATGACTCCGTTGTTGATGACTTCCATGGCGTCAAGGTTT CCGATCCTTATCGATGGCTGGAGGATCCTGATTCGGAGGAAACCAAAGCTTTCGTGGAAGAGCAGGTTCAGCTCACAGATTCCGTGCTGAAGACGTGTGA GGCGAGGGAGAAGCTTAAGGAGAAGATTACCAAGCTCTTCGACCATCCCCGTTATGATGCTCCCTTCAAGCGGGGCGACAAGTATTTCTACTTCCATAAC ACCGGCCTTCAGGCCCAGAGCGTCCTCTACGTTCAGGATGGTTTGGACGGAGAGGCAGAGGTTTTGCTCGACCCCAATGCATTGAGCGAGGATGGTACTG TGGCCCTCGCCAAACTTACAGTTAGTGAGGATGGCAAGTACATGGCCTACGGGCTTAGCTCCAGCGGGAGTGATTGGGTAACCATCAAACTCATGCATAT TGAGGACAAGCGAGTTGAGGCTGACACAATATCTTGGGCAAAGTTTACGAGTATCAGTTGGACACATGATAGTAAAGGATTCTTCTATTGCCGTTATGCT GCTCCCAAAGATGGAGAAAAGTTAGATGCTGGGACAGAGACCAATATTAATCTGCATCAGGAAGTGTATTATCATTTCTTGGGTACAGATCAATCCGAGG ACATTTTGTGTTGGAATGATCAAGAAAACCCCAAATATCAATTCGGAACAGAGGTGGCTAAGGATGGCAAGCATCTTTTCCTGTATACCTACGATGGGTG TGAACCGGTCAACAAAGTGTACTACTGCGATATGTCTACACTTCCAGGAGGCCTAGCCGGTTTCAAGGGAGGAAACAGTCTTCTCCCTTTGACTAAGCTT GTTGACAACTTAGATGCACAGTATGATGCCATTGCGAACGACGGCACCTCATTTACATTCATGACCAACAAAGATGCACCTAGATATAAACTAGTGAGGG TGGATTTGAAGGACCCAAATTCGTGGACTGATGTTGTCCCCGAATCTGACAAGGATGTATTGGAAGCAGCATACGCTGTTAATGGAGATCAATTGATATT GAGTTACCTGAGTGATGTTAAGCATGTGTTGCAGATAAGAGACTTGAAGACAGGATCATTTCTGCATCAGCTGCCAATTGGCATCGGCTCTGTTACTCGA GTGTCTGCAAGAAGACAAGACAGCATAGCATTTATTGGCTTTACTAACTTTCTTTCCCCTGGCATCATCTACCAATGCGATTTTGGATCTGGGAATCCGG AAATGAAGATATTTCGGGAGATCAGTGTACCTGGATTTGATCGCTCAGAATTCGAAGTGAATCAGGTTTTTGTGACTGGTAAAGACGGCACTAAGTTCCC AATGTTCATCGGTTCCAAGAAGGATATAAAACTGGATGGATCGCACCCATGCTTGTTGTACGGATATGGTGGATTCAATATCAGCATCACTCCATCTTTC AGTGTGACTCGGATAACACTGGCAAAGCATTTAGGTGTGGTGTTCTGCATTGCTAACATTCGCGGTGGTGGAGAGTACGGTGAAGAATGGCACAAAGCAG GTTCGCTTGGCAAGAAACAGAACGTCTTTGATGACTTCATCTCTGCTGGCGAATACCTCGTATCAGCAGGATATACCCAGCCCAATAAGCTCTGCATTGA AGGCGGAAGCAACGGTGGTCTCCTTGTTGGGGCATGCATAAATCAGCGGCCTGACCTTTTCGGGTGTGCTCTGGCTCACGTTGGAGTGATGGACATGCTG CGATTTCACAAGTTTACGATAGGTCATGCTTGGACAACCGATTATGGATGTGCAGACAAGGAGGAAGAGTTCGATTGGCTGATCAAGTACTCTCCACTGC ACAATGTGAGAAGGCCTTGGGAAGCGAACCCGGATCAGCAGGTTCAGTACCCACCTACCATGTTGCTGACAGCCGATCACGATGACAGGGTCGTGCCGTT ACACTCGCTGAAACTGTTGGCGACGTTGCAGTACGTTCTGTGTACCAGCTTGGACAAGAGTCCCCAAACCAACCCAATCATCGGCCGGATTGACAGGAAG TCCGGCCACGGTGCCGGACGTCCGACTAAGAAAATGATTGAGGAAGCGGCAGATCGGTATGGATTCATGGCTAAGATGGTGAATGCGACGTGGACCGAGT AG
AA sequence Show only first row Show all	>Lus10021235 pacid=23178202 polypeptide=Lus10021235 locus=Lus10021235.g ID=Lus10021235.BGIv1.0 annot-version=v1.0 MGSLSALDGGACLTYPKTRRDDSVVDDFHGVKVSDPYRWLEDPDSEETKAFVEEQVQLTDSVLKTCEAREKLKEKITKLFDHPRYDAPFKRGDKYFYFHN TGLQAQSVLYVQDGLDGEAEVLLDPNALSEDGTVALAKLTVSEDGKYMAYGLSSSGSDWVTIKLMHIEDKRVEADTISWAKFTSISWTHDSKGFFYCRYA APKDGEKLDAGTETNINLHQEVYYHFLGTDQSEDILCWNDQENPKYQFGTEVAKDGKHLFLYTYDGCEPVNKVYYCDMSTLPGGLAGFKGGNSLLPLTKL VDNLDAQYDAIANDGTSFTFMTNKDAPRYKLVRVDLKDPNSWTDVVPESDKDVLEAAYAVNGDQLILSYLSDVKHVLQIRDLKTGSFLHQLPIGIGSVTR VSARRQDSIAFIGFTNFLSPGIIYQCDFGSGNPEMKIFREISVPGFDRSEFEVNQVFVTGKDGTKFPMFIGSKKDIKLDGSHPCLLYGYGGFNISITPSF SVTRITLAKHLGVVFCIANIRGGGEYGEEWHKAGSLGKKQNVFDDFISAGEYLVSAGYTQPNKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML RFHKFTIGHAWTTDYGCADKEEEFDWLIKYSPLHNVRRPWEANPDQQVQYPPTMLLTADHDDRVVPLHSLKLLATLQYVLCTSLDKSPQTNPIIGRIDRK SGHGAGRPTKKMIEEAADRYGFMAKMVNATWTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76140			Prolyl oligopeptidase family p...		Lus10021235 [exp]	0	1
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10024068 [exp]	4.6	0.9093
AT3G02360			6-phosphogluconate dehydrogena...		Lus10003043 [exp]	4.7	0.9040
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10024414 [exp]	5.5	0.8734
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10019811 [exp]	6.5	0.8810
AT5G13420			Aldolase-type TIM barrel famil...		Lus10043136 [exp]	9.4	0.8781
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10011858 [exp]	15.6	0.8637
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10009985 [exp]	17.7	0.8717
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022794 [exp]	17.9	0.8629
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	18.2	0.8618
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025324 [exp]	21.5	0.8326

Compare expression of checked genes

Lus10021235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.