Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20410 513 / 2e-178 Pseudouridine synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005645 [exp] 706 / 0 AT1G20410 452 / 6e-156 Pseudouridine synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G247500 [exp] 635 / 0 AT1G20410 541 / 0.0 Pseudouridine synthase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021236 pacid=23178293 polypeptide=Lus10021236 locus=Lus10021236.g ID=Lus10021236.BGIv1.0 annot-version=v1.0 ATGTCAGGGGGAAAAGAAGCTGAACTTCTGTCCGACACACCAACCACCGCAGCGGAGGTGGCGGTAGCGAACTACGTCGCGGGAGGCAATGACAAGGAGG CGGGACTCCTCGCAGACGCCATTCGTTCCTTGCCTCCTGAAGCCGTCAAGGACTTGTTGACCTCTGAGGTCTGCATCAGATGCATCCTCAGACTGTTTGG ATTCAGAGATCACATTTACTTTCGTCCATATATTTCAAAATCTATGGTGCATTCTGTTCTTGGGGAATCTGAATATTTGGACCAGTACGGGATACTTTTT GAATGTAATGGAGGAGAGGAGAAGGCAACGGATCCTTCTACATGTAAGGAATCAGAAGTTCAACCGATTGTATGCAGGATGTGTTTAGGCATTTTGCAGT ACTTTTATCGGGATGATAAAGACATACTGGTGCAAAAGGTGAGTGCTGACTGCTTAGCTGCTTCGGTTGCTGAACTCGTAAAGCAAGAGGGTCATGAGAT CAGTAGTTTTTCCCTTGAAGTGTCGGTACCGCCTGTCATCTCTGAAAATGATGATGTAGTCTGGTCGTATATGAAGAGGAAGTATGGACCAGAGCTTGGT TTTGCAGAAGAGACTTTAAAATGTGTTTCTGCTAAGGATGCCCTAAAACTGGCAATAACTAATCCTCTTGAAAGTATGCTGAATGTTAAATCCAGCTCTA CTCCAAGCTCTTTCCGTATCCGTCTCACGTACAGTCAAATAAAGTCATCTTGTATGGCTAAGTCTCCAGGAGAAAGAAATGAAGCTTGCAAGAGAAGAAA ACTGGCTGATGTGAATGCAGTCAGTGACAGATCTTCTAACAGCTCTGAGTCTTCAGAGATCTTCAAGTTTCCTTTGGGAAAGGTCGATGAACCCTACTAC ATGGCTCTCCATTGCTACCGAACATCTGTCTACTTCGGTGGGAGATACCTCAAGTTCTCAAGAAATGTTAGTCAAACACGTTGGATTATTGATGATGAAA GAATGGGAGAATCCTCTGTCGAGGAAATAATAGGAAGCAACATACTTCCCGCTTGTCAAGGTGACAGTTACAAGTTCCATGCTGCTGGCAGAGAGGATAT TGATGTGCGGATGTTGGGTTCAGGTAGACCCTTCTTGGTTGAAATACAAAATGCACGAAATATTCCATCGGAGGCTATTATTAAAGAAACAGAAATAAAA ATAAACAACATGGAGAAAAAATTGGTTGCAGTGAGAAATCTTAAATTGGAAGCTAATAACGGTTGGGGTTTAATGCATGAAGGTGAATCGGAAAAGCAGA AACAATACTGTTCATTAGTGTGGATTTCACGCCCACTTGAAGATCAAGACGTGCAGTCTATAATTACACTGAAGGATATGAAAATTTCACAAAGGACCCC AATAAGGGTGCTTCATCGGCGAAGTCCTCTAGATCGTGAAAAGATGATACACTGGATGAAAATCGAGAGGGTTGCTGAAAGTTCTCAATATTTTCTGCTA CACTTGTGCACACAGGCTGGGACATATATCAAGGAATTTGTTCATGGGGATTTTGGCCGCACCAGTCCAAGCATCGGGTCGATTTTGGGATGTAGAGCGG AGATATTGCAGTTGGATGTTACGGACGTGAAAATGGATGGTTTCTGA
AA sequence Show only first row Show all	>Lus10021236 pacid=23178293 polypeptide=Lus10021236 locus=Lus10021236.g ID=Lus10021236.BGIv1.0 annot-version=v1.0 MSGGKEAELLSDTPTTAAEVAVANYVAGGNDKEAGLLADAIRSLPPEAVKDLLTSEVCIRCILRLFGFRDHIYFRPYISKSMVHSVLGESEYLDQYGILF ECNGGEEKATDPSTCKESEVQPIVCRMCLGILQYFYRDDKDILVQKVSADCLAASVAELVKQEGHEISSFSLEVSVPPVISENDDVVWSYMKRKYGPELG FAEETLKCVSAKDALKLAITNPLESMLNVKSSSTPSSFRIRLTYSQIKSSCMAKSPGERNEACKRRKLADVNAVSDRSSNSSESSEIFKFPLGKVDEPYY MALHCYRTSVYFGGRYLKFSRNVSQTRWIIDDERMGESSVEEIIGSNILPACQGDSYKFHAAGREDIDVRMLGSGRPFLVEIQNARNIPSEAIIKETEIK INNMEKKLVAVRNLKLEANNGWGLMHEGESEKQKQYCSLVWISRPLEDQDVQSIITLKDMKISQRTPIRVLHRRSPLDREKMIHWMKIERVAESSQYFLL HLCTQAGTYIKEFVHGDFGRTSPSIGSILGCRAEILQLDVTDVKMDGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20410			Pseudouridine synthase family ...		Lus10021236 [exp]	0	1
AT3G45850			P-loop containing nucleoside t...		Lus10036146 [exp]	4.0	0.8600
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10013565 [exp]	4.5	0.8655
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10007427 [exp]	5.2	0.8386
AT1G20410			Pseudouridine synthase family ...		Lus10005645 [exp]	5.8	0.8044
AT5G19670			Exostosin family protein (.1)		Lus10012973 [exp]	8.4	0.8253
AT1G09980			Putative serine esterase fami...		Lus10038351 [exp]	8.5	0.8178
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10000949 [exp]	10.4	0.8134
AT1G14020			O-fucosyltransferase family pr...		Lus10036785 [exp]	10.5	0.7934
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10017272 [exp]	11.5	0.8380
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10041421 [exp]	12.0	0.8100

Compare expression of checked genes

Lus10021236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.