Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028722 [exp] 207 / 1e-63 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10028649 [exp] 139 / 2e-37 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10011267 [exp] 129 / 6e-36 ND 39 / 0.002 Lus10018912 [exp] 117 / 4e-31 ND / Lus10005647 [exp] 110 / 4e-30 ND / Lus10028610 [exp] 98 / 3e-25 ND / Lus10028601 [exp] 78 / 7e-18 ND 38 / 0.001 Lus10003089 [exp] 79 / 3e-17 AT5G53840 54 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10028626 [exp] 77 / 8e-17 AT5G48920 51 / 7e-08 tracheary element differentiation-related 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G224975 [exp] 66 / 3e-12 AT5G53840 48 / 4e-06 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021237 pacid=23178304 polypeptide=Lus10021237 locus=Lus10021237.g ID=Lus10021237.BGIv1.0 annot-version=v1.0 ATGCTTCAAACACGTCCAGCTAATCAGCTTAGATCCTTACGATTGGGCTATGTGGACGTCTCGGGAGAGATTCTCGAGCATTTCATCGCTAGCTGTCCTC TCCTCGAAGAGCTAGTCGTATGTTCTGATGCCCTAACGAAGCTCAGAGTGGTGGGTGGTCGGCGATTGAAGTACTTGGAAATACGAAGGTGCAGGAGTTT GAAATTTCTTGAGATTGATCATGCACCTTGCCTCACTTCCTTTGTATATGATAACAACCACCCTGTGGACGAGTTTCGAGTGCTGGAGGCCCTTGGCCTG GAAATAGTGCCCCAGTACATGCCGCTGGTTGATGAGGTGGTGGAACACACTCGCCTTGAGCGGCTAAGAGTGGGAGTTGTGGTTGATGGGAATAGCTATC TTCTTAGATTGATTCCCTTGATCAATGCTTGTCCTCGTTTGCAGACGCTGCAATTGTTCTTGCATACTTACCCTGGCACACACGACTTTCGTCTAGACGT GATCGATGTAGTTAAAGTAAGCCAGGAGAGCATTAAAGTGGTGGAAATAGTTGGATTTCATGGCTACGTCATGGAGCGTGAGTTTGTGGAGTATGTGATG AAGTATTTTGTGGGTTTAAAAAGAATAGTGATCGATCGATGCCTGACTCGTTTTACAAGTTTGTCTTATGCTGCTGATTCAGTATCCAAAGGAACCCAGA CTTCATGCACCAAAGAGCAAGCACATGAAGCTGAAAAGCTGGCATTGGAGTACAAATCGAGAGCACCCGCAAACCTCGAATTTGTTGTAATTTTGTAG
AA sequence Show only first row Show all	>Lus10021237 pacid=23178304 polypeptide=Lus10021237 locus=Lus10021237.g ID=Lus10021237.BGIv1.0 annot-version=v1.0 MLQTRPANQLRSLRLGYVDVSGEILEHFIASCPLLEELVVCSDALTKLRVVGGRRLKYLEIRRCRSLKFLEIDHAPCLTSFVYDNNHPVDEFRVLEALGL EIVPQYMPLVDEVVEHTRLERLRVGVVVDGNSYLLRLIPLINACPRLQTLQLFLHTYPGTHDFRLDVIDVVKVSQESIKVVEIVGFHGYVMEREFVEYVM KYFVGLKRIVIDRCLTRFTSLSYAADSVSKGTQTSCTKEQAHEAEKLALEYKSRAPANLEFVVIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10021237 [exp]	0	1
AT1G29820			Magnesium transporter CorA-lik...		Lus10004542 [exp]	1.4	0.7996
AT3G07750			3'-5'-exoribonuclease family p...		Lus10006382 [exp]	24.0	0.7381
AT4G25280			P-loop containing nucleoside t...		Lus10031135 [exp]	75.3	0.6913
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016025 [exp]	75.4	0.6881
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10038671 [exp]	76.5	0.6534
AT3G12540			Protein of unknown function, D...		Lus10023409 [exp]	136.9	0.6481
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10034964 [exp]	166.7	0.6609
AT2G21195			unknown protein		Lus10041068 [exp]	181.3	0.6428
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10014077 [exp]	187.2	0.6553
					Lus10008068 [exp]	206.6	0.6403

Compare expression of checked genes

Lus10021237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.