Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42250 149 / 6e-44 Zinc-binding alcohol dehydrogenase family protein (.1) AT4G22110 125 / 4e-35 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22440 123 / 3e-34 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22430 115 / 4e-31 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G24760 106 / 6e-28 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT5G43940 96 / 7e-24 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G32780 84 / 1e-19 GroES-like zinc-binding dehydrogenase family protein (.1) AT1G77120 83 / 4e-19 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT1G64710 74 / 8e-16 GroES-like zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005651 [exp] 231 / 3e-76 AT5G42250 430 / 7e-151 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10023572 [exp] 152 / 1e-44 AT5G42250 439 / 1e-152 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10040457 [exp] 147 / 4e-43 AT5G42250 488 / 7e-173 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10004786 [exp] 121 / 3e-33 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10000624 [exp] 119 / 2e-32 AT1G22440 514 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10004785 [exp] 116 / 3e-31 AT1G22430 536 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10031890 [exp] 97 / 3e-24 AT5G24760 566 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Lus10029757 [exp] 89 / 2e-21 AT1G77120 602 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10000496 [exp] 84 / 3e-19 AT5G43940 693 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013400 [exp] 172 / 1e-52 AT5G42250 521 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Potri.004G067000 [exp] 105 / 1e-27 AT5G24760 616 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Potri.002G254900 [exp] 95 / 1e-23 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.014G193800 [exp] 93 / 9e-23 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.019G041600 [exp] 87 / 1e-20 AT1G22430 300 / 3e-99 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.019G041500 [exp] 86 / 4e-20 AT1G22430 308 / 1e-102 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.002G072100 [exp] 82 / 5e-19 AT1G77120 645 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060000 [exp] 82 / 1e-18 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 82 / 1e-18 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108601 [exp] 81 / 1e-18 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10021239 pacid=23178259 polypeptide=Lus10021239 locus=Lus10021239.g ID=Lus10021239.BGIv1.0 annot-version=v1.0 ATGATGACTTGTGTAGAGCCAACTGCCAGGCAGAAGGCTACTGTTCAATTCACTCACCATTGCTCTCCGGATCAGCATTCAGGAATGGGTGCTGCGTGGA GGACGGCAGATGTGGAGAAAGGGTCGACTGTGGTCATCTTTGGTCTTGGGTCAATTGGCTTGGCGAGTATCTTTACATGTGTGCCTGGTGACGCTAACAG AAGTAAATTGAAGCAGGTGATCAATGAGATGACAGCAGGTGGTGCAGACTATTGCTTTGAGTGTGTTGGTCTGCCGTCTTTGATGGAGGAAGCATATGCC TGTTGCCGCAAGTGGTGGGGAAAGACGATTGTCCTGGGAGTTGCCAAACCGTTGTTTGAGATTAAGCTGAAATGCTCCAACGTCCTTCACTCTGGGAAAA CACTCACAGGCTCACTCTTTGGAGGTCTCAAACCGAAATTGGATATCACAATGCTCCTAAAACATTATGTGAACAAGGTGTGA
AA sequence Show only first row Show all	>Lus10021239 pacid=23178259 polypeptide=Lus10021239 locus=Lus10021239.g ID=Lus10021239.BGIv1.0 annot-version=v1.0 MMTCVEPTARQKATVQFTHHCSPDQHSGMGAAWRTADVEKGSTVVIFGLGSIGLASIFTCVPGDANRSKLKQVINEMTAGGADYCFECVGLPSLMEEAYA CCRKWWGKTIVLGVAKPLFEIKLKCSNVLHSGKTLTGSLFGGLKPKLDITMLLKHYVNKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10021239 [exp]	0	1
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10042336 [exp]	3.7	0.9602
AT5G62440			Protein of unknown function (D...		Lus10022837 [exp]	5.3	0.9499
					Lus10012084 [exp]	5.8	0.8544
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	6.7	0.9405
AT1G06770		DRIP1	DREB2A-interacting protein 1 (...		Lus10042532 [exp]	7.7	0.9405
AT3G05550			Hypoxia-responsive family prot...		Lus10031490 [exp]	8.7	0.9405
					Lus10040014 [exp]	9.5	0.9405
					Lus10043436 [exp]	10.0	0.7510
AT3G23350			ENTH/VHS family protein (.1)		Lus10021173 [exp]	10.2	0.9405
					Lus10000984 [exp]	11.0	0.9405

Compare expression of checked genes

Lus10021239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.