Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76180 71 / 2e-15 ERD14 EARLY RESPONSE TO DEHYDRATION 14, Dehydrin family protein (.1.2) AT1G20450 63 / 1e-11 LTI45, ERD10, LTI29 LOW TEMPERATURE INDUCED 45, LOW TEMPERATURE INDUCED 29, EARLY RESPONSIVE TO DEHYDRATION 10, Dehydrin family protein (.1.2) AT1G20440 54 / 8e-09 AtCOR47, RD17, COR47 cold-regulated 47 (.1) AT5G66400 42 / 6e-05 ATDI8, RAB18 RESPONSIVE TO ABA 18, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, Dehydrin family protein (.1.2) AT4G38410 42 / 0.0001 Dehydrin family protein (.1) AT3G50980 40 / 0.0002 XERO1 dehydrin xero 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005652 [exp] 209 / 9e-69 AT1G20450 81 / 1e-18 LOW TEMPERATURE INDUCED 45, LOW TEMPERATURE INDUCED 29, EARLY RESPONSIVE TO DEHYDRATION 10, Dehydrin family protein (.1.2) Lus10021827 [exp] 58 / 4e-10 AT1G76180 106 / 1e-28 EARLY RESPONSE TO DEHYDRATION 14, Dehydrin family protein (.1.2) Lus10034568 [exp] 55 / 5e-09 AT1G20450 102 / 5e-27 LOW TEMPERATURE INDUCED 45, LOW TEMPERATURE INDUCED 29, EARLY RESPONSIVE TO DEHYDRATION 10, Dehydrin family protein (.1.2) Lus10041969 [exp] 40 / 0.0005 AT5G66400 66 / 2e-13 RESPONSIVE TO ABA 18, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, Dehydrin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G248100 [exp] 57 / 7e-10 AT1G76180 49 / 4e-07 EARLY RESPONSE TO DEHYDRATION 14, Dehydrin family protein (.1.2) Potri.002G013200 [exp] 50 / 3e-07 AT1G20440 50 / 1e-06 cold-regulated 47 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00257 [flax] [poplar] Dehydrin Dehydrin
Representative CDS sequence Show only first row Show all	>Lus10021240 pacid=23178194 polypeptide=Lus10021240 locus=Lus10021240.g ID=Lus10021240.BGIv1.0 annot-version=v1.0 ATGGCCGAGGAGTACAAGAACGTCAATGAGCAGCAGAAGCAAGAGGGATCAGTCGAAGCAACCGACCGTGGGTTGTTCGATTTCCTCGGGAAGAAAGGTG AAACGAAGCCGGAAGTTGCTTCTGCTCCGGGCACTCTTCCCAACACTACTCCTCCTCAAGAGCAACAAGTGATGTCCTCTCAGTTCGATGACAAGGTTCA TGTCTCCCATCCTCCCAAGGAACCTGCAGAAGAGAAGAAAGCTGGGATCTTTCACCGATCCAACAGCAGCTCCTCCAGCTCCTCAAGCGAGGAAGAGGTG GAGGAAGGAGGGGAGAAGATCAGGAGGAAGAAGGACAAGAAGAAGAAGCTGCAGAAGGAGGAAGGGCCTCTTGGCGGTCCTCATCATCAGCCTGAAGAGA AGAAGGGTTTGATGGACAAGATCAAGGATAAGCTTCCTGGTGGTGAGAAGAAGACTGAGGAATCTGCTGCTGCTGCTGCTGCTGGTCATGGGGTTGACCA TCATAATGACGTGGCGACTGCTCACCCGCTGGCTCCAGAGGAGGAGAAGAAGGGGTTACTGGACAAGATTAAGGAGAAGCTGCCTGGGTATCACCCTAAG GCAGAGGAAGCTGGTCACAAGGACAATGAGAAACCACCCTCCTACTAG
AA sequence Show only first row Show all	>Lus10021240 pacid=23178194 polypeptide=Lus10021240 locus=Lus10021240.g ID=Lus10021240.BGIv1.0 annot-version=v1.0 MAEEYKNVNEQQKQEGSVEATDRGLFDFLGKKGETKPEVASAPGTLPNTTPPQEQQVMSSQFDDKVHVSHPPKEPAEEKKAGIFHRSNSSSSSSSSEEEV EEGGEKIRRKKDKKKKLQKEEGPLGGPHHQPEEKKGLMDKIKDKLPGGEKKTEESAAAAAAGHGVDHHNDVATAHPLAPEEEKKGLLDKIKEKLPGYHPK AEEAGHKDNEKPPSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76180		ERD14	EARLY RESPONSE TO DEHYDRATION ...		Lus10021240 [exp]	0	1
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040697 [exp]	3.6	0.9056
AT1G25370			Protein of unknown function (D...		Lus10035144 [exp]	13.4	0.8798
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10011042 [exp]	14.5	0.8420
AT3G27200			Cupredoxin superfamily protein...		Lus10041570 [exp]	18.5	0.8797
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10001705 [exp]	21.0	0.8773
AT5G24010			Protein kinase superfamily pro...		Lus10039274 [exp]	21.4	0.8162
AT5G12300			Calcium-dependent lipid-bindin...		Lus10036036 [exp]	23.5	0.8764
					Lus10006401 [exp]	24.4	0.8670
AT1G72230			Cupredoxin superfamily protein...		Lus10008720 [exp]	24.7	0.8327
AT4G22790			MATE efflux family protein (.1...		Lus10007006 [exp]	28.5	0.7941

Compare expression of checked genes

Lus10021240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.