Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44990 691 / 0 MAX3, CCD7, ATCCD7 carotenoid cleavage dioxygenase 7 (.1) AT3G63520 64 / 2e-10 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT4G19170 63 / 4e-10 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT3G24220 53 / 5e-07 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT4G32810 53 / 6e-07 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005653 [exp] 196 / 8e-60 AT2G44990 139 / 7e-40 carotenoid cleavage dioxygenase 7 (.1) Lus10042829 [exp] 81 / 2e-15 AT3G63520 207 / 2e-59 carotenoid cleavage dioxygenase 1 (.1) Lus10029513 [exp] 68 / 1e-11 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10019710 [exp] 58 / 2e-08 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10023673 [exp] 58 / 2e-08 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10001599 [exp] 57 / 3e-08 AT4G32810 687 / 0.0 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1) Lus10035696 [exp] 56 / 7e-08 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10038721 [exp] 55 / 1e-07 AT4G32810 689 / 0.0 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1) Lus10016410 [exp] 55 / 2e-07 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G056800 [exp] 818 / 0 AT2G44990 779 / 0.0 carotenoid cleavage dioxygenase 7 (.1) Potri.006G239300 [exp] 85 / 6e-17 AT3G63520 240 / 8e-72 carotenoid cleavage dioxygenase 1 (.1) Potri.018G043500 [exp] 82 / 3e-16 AT3G63520 243 / 7e-73 carotenoid cleavage dioxygenase 1 (.1) Potri.018G043000 [exp] 79 / 3e-15 AT3G63520 236 / 5e-70 carotenoid cleavage dioxygenase 1 (.1) Potri.009G060500 [exp] 61 / 1e-09 AT3G63520 918 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265400 [exp] 61 / 1e-09 AT3G63520 908 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.009G151900 [exp] 61 / 2e-09 AT4G19170 548 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.001G265900 [exp] 60 / 3e-09 AT3G63520 880 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.006G239402 [exp] 60 / 4e-09 AT3G63520 208 / 1e-59 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265600 [exp] 59 / 5e-09 AT3G63520 878 / 0.0 carotenoid cleavage dioxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [flax] [poplar] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Lus10021241 pacid=23178215 polypeptide=Lus10021241 locus=Lus10021241.g ID=Lus10021241.BGIv1.0 annot-version=v1.0 ATGCCGATTTCCAAAATGCAAGCAAATCCGACGGTCAATTTCCCATCGCTGCCGGCAAAACTACTACTACCTCCTCCTCCTCCGTCACTTCATCAACATA ATCGGAACTTCAAATCAAGCCAAGTACGACCCAGAGCCATCTCCATAACAACAACAACATCTCCCAACATCGTCCACTCCGAAACAATCACTCCGTACGA CGACGAGGTGGCTGCTTTCTGGGACTACCAATTCCTCTTCATCTCCCAGCGATCCGAGACAACCCACCCGATCACCCTCAAAGTGGTGGACGGTGAAGTT CCCTCCGACTTCCCCACAGGGACATACTACCTAGCCGGACCGGGACTCTTCAGCGACGACCATGGGTCAACGGTGCACCCTCTCGACGCCCACGGATACG TCAAGTCGTTTCGGATCGTGGAAGAAGGGACGAAGAAAGTGGTGTCGTACATGGCCAAGTACGTAAAGACAGAGGCGCAGATGGAGGAGCACGACCCCGT AACCGACACGTGGCGGTTCACTCACCGGGGACCCTTCTCGTTGTTGAAGGGTGGGAAGCGGGTCGGGAATACTAAGGTGATGAAGAACGTGGCGAATACT AGCGTGCTGAGATGGGGTGGCCGTTTGTTCTGCCTCTGGGAAGGTGGGGACCCTTACGAGATCGATCCCCGATCGTTGGATACGATCGGGAAATTCGGAT TGATCGACCGCTGTGATAATAATTCTGATCATGATGACGACAAGAAGCAATTTGACGTTGCCGCCGCCGCCGGCCAGGGTGATGTTTGGGATTTGGCGGC CGGCTTGTTGAAGCCTGTTTTATACGGGTTATTTAGAATGCCTCCAAAGAGATTGCTGTCGCATTATAAGCTGGACACCAAAAGGGACAGGCTACTTACT ATGTCCTGCAATGCCGAGGATATGCTCATGCCGAGGAACAATTTTACATTCTACGAATATGATGCCAACTTTAAGCTGTTGCAGAGCCAAGAATTTGCAA TTCCAGATCAGTTGATGATCCATGATTGGGCCTTTACGGACACCCATTACATCTTGTTCGGAAATCGGATCAAAATTGATCCCCTTGGGGCAATCCTTTC GGTGTGCGGATTATCTCCAATGATATCCACATTGTCAGTGAATCCCGGCACCACTTCTCCGATCTACTTGCTTCCTCGTTTTAAGGGTGATCGTGAGTCT TTGAAACGAGATTGGAGAGTCCCTATAGAAGCTGGGTTGCCAATGTGGTTGAATCATGTTGGCAATGCATTTCAGTCTGTTGATGAACAAGGAAACTCAG AGATCCACATTCATGCTGCCACTTGCTCTTATGAGTGGTTCAATTTCCACAAACTATTCGGATACAACTGGAGGAGTGGGAAGCTAGACCCGTCAGCAAT GAATTTCACAAAGGACAGCGACTACGAACTCTTGCCGCATCTCGTCGAGATCACCATCAACTTGGGCACCTACGATAAATGTGACGTAGAACCGCTGAAT AAATGGAACAAGGCAACCGACTTCCCCATCATAAACCCTGCCTTCTCCGGCGAGAAACACCGTTACATTTACGCCGCCACTTGTTCCGGGTCCCGCCGAA CGCTGCCCAACTTCCCTTTTGATACGGTGGTGAAGATGGACGGCGAGGAGAAGACCGTGTCCACGTGGTCTGCTCCCAGGAGGACATTTGTCGGGGAGCC CATCTTTGTTCCGAAATCCGGCTCTGTGGGAGAAGAAGAAGATGACGGCTACCTCCTAGTCGTCGAGTATGCGGTGGCGATACAGAAGTGTTATCTGGTG ATATTGGATCCGAAGAAGATGATTGGGGCAGCTGCTGATGGTGCACTTGTAGCGCGGTTGGAAGTCCCTAAGGAGCTCAATTTCCCGCTTGCTTTCCATG GCTTTTGGGCTACCAATCTACACTACTGA
AA sequence Show only first row Show all	>Lus10021241 pacid=23178215 polypeptide=Lus10021241 locus=Lus10021241.g ID=Lus10021241.BGIv1.0 annot-version=v1.0 MPISKMQANPTVNFPSLPAKLLLPPPPPSLHQHNRNFKSSQVRPRAISITTTTSPNIVHSETITPYDDEVAAFWDYQFLFISQRSETTHPITLKVVDGEV PSDFPTGTYYLAGPGLFSDDHGSTVHPLDAHGYVKSFRIVEEGTKKVVSYMAKYVKTEAQMEEHDPVTDTWRFTHRGPFSLLKGGKRVGNTKVMKNVANT SVLRWGGRLFCLWEGGDPYEIDPRSLDTIGKFGLIDRCDNNSDHDDDKKQFDVAAAAGQGDVWDLAAGLLKPVLYGLFRMPPKRLLSHYKLDTKRDRLLT MSCNAEDMLMPRNNFTFYEYDANFKLLQSQEFAIPDQLMIHDWAFTDTHYILFGNRIKIDPLGAILSVCGLSPMISTLSVNPGTTSPIYLLPRFKGDRES LKRDWRVPIEAGLPMWLNHVGNAFQSVDEQGNSEIHIHAATCSYEWFNFHKLFGYNWRSGKLDPSAMNFTKDSDYELLPHLVEITINLGTYDKCDVEPLN KWNKATDFPIINPAFSGEKHRYIYAATCSGSRRTLPNFPFDTVVKMDGEEKTVSTWSAPRRTFVGEPIFVPKSGSVGEEEDDGYLLVVEYAVAIQKCYLV ILDPKKMIGAAADGALVARLEVPKELNFPLAFHGFWATNLHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Lus10021241 [exp]	0	1
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10015826 [exp]	1.7	0.9701
AT1G24530			Transducin/WD40 repeat-like su...		Lus10036881 [exp]	3.0	0.9668
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10018926 [exp]	4.0	0.9668
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010479 [exp]	4.7	0.9588
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Lus10021365 [exp]	4.9	0.9614
AT1G73160			UDP-Glycosyltransferase superf...		Lus10032187 [exp]	4.9	0.9604
AT3G53250			SAUR-like auxin-responsive pro...		Lus10009219 [exp]	5.3	0.9545
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10015451 [exp]	5.3	0.9605
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Lus10017045 [exp]	6.7	0.9592
AT3G08650			ZIP metal ion transporter fami...		Lus10035606 [exp]	7.7	0.9652

Compare expression of checked genes

Lus10021241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.