Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013609 [exp] 99 / 2e-28 ND 37 / 3e-04
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021242 pacid=23178295 polypeptide=Lus10021242 locus=Lus10021242.g ID=Lus10021242.BGIv1.0 annot-version=v1.0 ATGAGTTGTTTGTGGTGGATGAAATGGGTAGGCTACGTGGCGGCGGTGGCGGTTTCCGGGGGAAGTGTTGCTCTGATAGCTCGTCAAATCCACGACCGAC TGCTTGAAGATTTCATGTCTCAGCTCCATTTCCACCTCCTCCCTAGCAATTCTCCTCCTCCTGATGATAATAGTAATAATTCGAAACCCAGGACGAAACG GGTGCGTTTTGCTGATGACGTGGTGGCAAGAGATGATCTTAAGCGGATCGCCGCCGGGAGACTACTCCGGCCAAGAGAGGAGCTCTGTTCGGGGAGTTAT TAG
AA sequence Show only first row Show all	>Lus10021242 pacid=23178295 polypeptide=Lus10021242 locus=Lus10021242.g ID=Lus10021242.BGIv1.0 annot-version=v1.0 MSCLWWMKWVGYVAAVAVSGGSVALIARQIHDRLLEDFMSQLHFHLLPSNSPPPDDNSNNSKPRTKRVRFADDVVARDDLKRIAAGRLLRPREELCSGSY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10021242 [exp]	0	1
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032073 [exp]	1.7	0.9691
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Lus10040393 [exp]	3.0	0.9439
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	3.7	0.9454
AT2G01800			COP1-interacting protein-relat...		Lus10000702 [exp]	4.2	0.9140
AT4G36945			PLC-like phosphodiesterases su...		Lus10019339 [exp]	5.0	0.9338
AT3G10720			Plant invertase/pectin methyle...		Lus10008937 [exp]	5.9	0.9204
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014606 [exp]	6.0	0.9405
AT5G47830			unknown protein		Lus10018732 [exp]	6.3	0.8444
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002986 [exp]	6.9	0.8695
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10036212 [exp]	7.1	0.8331

Compare expression of checked genes

Lus10021242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.