Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11690 64 / 6e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013608 [exp] 299 / 3e-103 AT3G11690 109 / 5e-29 unknown protein Lus10016197 [exp] 195 / 2e-62 AT3G11690 107 / 3e-28 unknown protein Lus10029349 [exp] 191 / 7e-61 AT3G11690 105 / 7e-28 unknown protein Lus10008446 [exp] 57 / 8e-10 AT2G27180 91 / 3e-23 unknown protein Lus10013375 [exp] 56 / 2e-09 AT2G27180 96 / 3e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066300 [exp] 115 / 6e-32 AT3G11690 62 / 5e-12 unknown protein Potri.006G200100 [exp] 86 / 1e-20 AT3G11690 / unknown protein Potri.009G151600 [exp] 56 / 2e-09 AT2G27180 54 / 1e-09 unknown protein Potri.004G190500 [exp] 51 / 6e-08 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021243 pacid=23178185 polypeptide=Lus10021243 locus=Lus10021243.g ID=Lus10021243.BGIv1.0 annot-version=v1.0 ATGATATTCGATATCGACAGTAACGGCGACGCCCACAGCGTCCTCAAATCAAAGGAGCCCTCTTTGGTACTAATCCGCCCTTCTTCCCCGGCGCTAGGCA AGCGGCGGCAGGACACTCTCCTCCCGCCGCGGCACCGGCGGAGCTACTCTGCCTCGGAGGCGTCCTGCTGCAGCAGCAGGTTCGGGGAGCTCGCCGGAGG CACGACGGCCGAGTGCGCGGCCATCGCCTGTTGCTGCCCCTGCGGCCTGGCCAACCTCCTATTCCTCACGATCTACAAGGTCCCCGTCGGGCTCTGCCGG AAGGCGCTGCGGCGGAAGCGGAGGGAGCATCTGATGAAGAAGGGGCTGTTGCTGCCGCGGTCAAGGCGGTGCCAGTGCGGGTGCGATGACACCGAGCTCC AGATTCATCCGATTCACGGAGACGCTCACTCGTTCGATATGAAGATGATGATGGGGATGCACTTGGATTTCGACGATGAGGAAACGGAGGAGGAGAACGT CTCCGTTAGGAAGATCCGCGGCGGAAAAGGAGGAGGTGGAGAGGAGATGGTGAAGCTGGAGAAAGAGATGTGGGAGACATTCTACGGAACGGGATTCTGG AGGAGTCCTTCGCAGAAGGAAGGTCCAGTAATCGGAGTTAAGAAGAACGGCGGTGGCGTTCCTCCTCCGGTGAGCACCGGATCGAATCTCAGAGATGCCT CTTCCAAGGCCAAAGAAACGTAA
AA sequence Show only first row Show all	>Lus10021243 pacid=23178185 polypeptide=Lus10021243 locus=Lus10021243.g ID=Lus10021243.BGIv1.0 annot-version=v1.0 MIFDIDSNGDAHSVLKSKEPSLVLIRPSSPALGKRRQDTLLPPRHRRSYSASEASCCSSRFGELAGGTTAECAAIACCCPCGLANLLFLTIYKVPVGLCR KALRRKRREHLMKKGLLLPRSRRCQCGCDDTELQIHPIHGDAHSFDMKMMMGMHLDFDDEETEEENVSVRKIRGGKGGGGEEMVKLEKEMWETFYGTGFW RSPSQKEGPVIGVKKNGGGVPPPVSTGSNLRDASSKAKET

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11690			unknown protein		Lus10021243 [exp]	0	1
AT3G08640			Protein of unknown function (D...		Lus10035607 [exp]	3.0	0.9192
					Lus10042011 [exp]	4.7	0.9209
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10004336 [exp]	4.9	0.9227
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10026362 [exp]	6.5	0.8529
AT3G52960			Thioredoxin superfamily protei...		Lus10002843 [exp]	9.5	0.9069
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10020502 [exp]	10.2	0.9115
					Lus10036557 [exp]	11.5	0.8936
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	13.4	0.9106
AT1G61800		ATGPT2, GPT2	ARABIDOPSIS GLUCOSE-6-PHOSPHAT...		Lus10007653 [exp]	13.5	0.8884
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027778 [exp]	14.0	0.8858

Compare expression of checked genes

Lus10021243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.