Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22000 325 / 3e-109 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) AT4G14220 109 / 2e-26 RHF1A RING-H2 group F1A (.1) AT4G00335 61 / 6e-11 RHB1A RING-H2 finger B1A (.1.2.3) AT5G38895 61 / 1e-10 RING/U-box superfamily protein (.1.2.3) AT3G02290 61 / 1e-10 RING/U-box superfamily protein (.1.2) AT5G15790 60 / 4e-10 RING/U-box superfamily protein (.1.2) AT4G23450 55 / 4e-09 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT5G41350 55 / 1e-08 RING/U-box superfamily protein (.1) AT2G20030 55 / 4e-08 RING/U-box superfamily protein (.1) AT1G14200 52 / 1e-07 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013606 [exp] 616 / 0 AT5G22000 337 / 4e-114 RING-H2 group F2A (.1.2.3) Lus10029351 [exp] 349 / 3e-119 AT5G22000 270 / 7e-89 RING-H2 group F2A (.1.2.3) Lus10016195 [exp] 336 / 3e-114 AT5G22000 276 / 2e-91 RING-H2 group F2A (.1.2.3) Lus10013374 [exp] 315 / 3e-104 AT5G22000 397 / 7e-137 RING-H2 group F2A (.1.2.3) Lus10008447 [exp] 311 / 3e-103 AT5G22000 397 / 4e-137 RING-H2 group F2A (.1.2.3) Lus10010513 [exp] 177 / 3e-51 AT4G14220 236 / 3e-74 RING-H2 group F1A (.1) Lus10034049 [exp] 169 / 2e-48 AT4G14220 228 / 2e-71 RING-H2 group F1A (.1) Lus10017916 [exp] 82 / 6e-19 ND / Lus10003597 [exp] 81 / 3e-17 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066400 [exp] 405 / 2e-140 AT5G22000 386 / 4e-133 RING-H2 group F2A (.1.2.3) Potri.006G200200 [exp] 394 / 5e-136 AT5G22000 385 / 9e-133 RING-H2 group F2A (.1.2.3) Potri.001G213800 [exp] 362 / 2e-123 AT5G22000 385 / 1e-132 RING-H2 group F2A (.1.2.3) Potri.008G149300 [exp] 179 / 3e-52 AT5G22000 186 / 4e-55 RING-H2 group F2A (.1.2.3) Potri.010G092300 [exp] 172 / 2e-49 AT4G14220 248 / 6e-79 RING-H2 group F1A (.1) Potri.014G087000 [exp] 64 / 2e-11 AT4G00335 222 / 2e-73 RING-H2 finger B1A (.1.2.3) Potri.017G100100 [exp] 62 / 1e-10 AT5G15790 230 / 6e-76 RING/U-box superfamily protein (.1.2) Potri.003G161600 [exp] 61 / 2e-10 AT5G15790 167 / 2e-51 RING/U-box superfamily protein (.1.2) Potri.001G068700 [exp] 61 / 3e-10 AT5G38895 161 / 1e-49 RING/U-box superfamily protein (.1.2.3) Potri.001G101700 [exp] 60 / 3e-10 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10021245 pacid=23178222 polypeptide=Lus10021245 locus=Lus10021245.g ID=Lus10021245.BGIv1.0 annot-version=v1.0 ATGAATTACTTGTATCGACCAACACCTCCGTGCGTCGACCCCGAGCCGATCGATGGAGAACTACTTTGGGGCGAGCGCAACCGACATCGAGCCGGTGAAA TTTTTGACAATGAGGGTCCGGAGGTGGATGAAGGGAAGAAAGCTGCAGCGGCTCAGATGATGACATCAGCTGCAGCTTTTGTGGAAGGAGGAATCCAGGA TGGCTGCGAGGATGCTTGCAGCATTTGCCTTGATGACTTCACTTCAACGGATCCTTCCACTCTGACAAACTGCAGGCATGAGTATCACCTCCAATGCATC CTTGAATGGTGCCAGAGAAGCTCAGATTGTCCCATGTGTCTGCAGCCAGTTAGTTTGAAAGACCCCTTGAGCCAAGAACTATTTGCAGCAGTCGAACGAG AGAGGAAAATCAGGGCTGCTGCTGCTTCTCGAAATACAACCACCATATTTCGTCATCCGACCCTGGGAGACTTTGAATTGCAACATTTGCCTGTTGGTGC TACCGATGCTGACCTGGAACAACGTATAATCCAGCACCTAGCTGCAGCTGCTGCTATGGGAAGAACTCACTATGGTCGGAGAGAAGCACACAGAGGTAGG TCTGCTGCTTCACAACGGCGTCCGCACTTCTTGGTATTCTCCCCTCATCCTAATGAACCATCTTCCGGACAAATCGATACCTCTATGTCACGCGAAAGTG AGCCAGCTCTCATCAATGTAGCTACTCCAGGAGCCCCTCTTACAGCTGATCTAAGCTCATCTCCACCGGTCTCTGCTGTCAGGCCGTTACTTCGTGCTGG ATCCTCTAGGGAATCTTCACACCCGAATCCAGATTCAGCGGGACCTTCCGACTTGCAGTCATTTTCGGAAACTTTGAAGTCCAGACTTAGTTCAGTATCA ATGAGGTACAGAGATTCGTTCTCGAGAAGCACGAGAGGGTGGAAGGAGAGGCTTTTCTCTCGAAGCAATTCACTAACAGATATTGGTACTGAAGTGAGGA GAGAAGTGAATGCTGGAATTGCAAGTGTTTCGCGAATGATGGATCGTCTTGAAACTAGAGATAGTAATGGACACGATGATGGTCCTAGGTCTCCTTCACC TTCCACTAGAAGCAATCGCAATGGTAGCAGCAACCAGAACGGAAGCAACCCTTCACCTTCGGTTACTGCAACTTCAGCGGCCACTTAA
AA sequence Show only first row Show all	>Lus10021245 pacid=23178222 polypeptide=Lus10021245 locus=Lus10021245.g ID=Lus10021245.BGIv1.0 annot-version=v1.0 MNYLYRPTPPCVDPEPIDGELLWGERNRHRAGEIFDNEGPEVDEGKKAAAAQMMTSAAAFVEGGIQDGCEDACSICLDDFTSTDPSTLTNCRHEYHLQCI LEWCQRSSDCPMCLQPVSLKDPLSQELFAAVERERKIRAAAASRNTTTIFRHPTLGDFELQHLPVGATDADLEQRIIQHLAAAAAMGRTHYGRREAHRGR SAASQRRPHFLVFSPHPNEPSSGQIDTSMSRESEPALINVATPGAPLTADLSSSPPVSAVRPLLRAGSSRESSHPNPDSAGPSDLQSFSETLKSRLSSVS MRYRDSFSRSTRGWKERLFSRSNSLTDIGTEVRREVNAGIASVSRMMDRLETRDSNGHDDGPRSPSPSTRSNRNGSSNQNGSNPSPSVTATSAAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10021245 [exp]	0	1
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10002378 [exp]	1.7	0.8582
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040278 [exp]	19.6	0.8517
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10043470 [exp]	26.5	0.8197
AT1G21380			Target of Myb protein 1 (.1)		Lus10042770 [exp]	30.0	0.8060
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10013603 [exp]	50.8	0.7672
AT4G00440			Protein of unknown function (D...		Lus10014776 [exp]	50.9	0.7790
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10020788 [exp]	62.1	0.8024
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10013571 [exp]	90.1	0.7808
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10017963 [exp]	113.6	0.7836
AT1G68630			PLAC8 family protein (.1)		Lus10004063 [exp]	150.6	0.7742

Compare expression of checked genes

Lus10021245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.