Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06390 230 / 5e-71 FLA17 FASCICLIN-like arabinogalactan protein 17 precursor (.1) AT3G11700 222 / 5e-68 FLA18 FASCICLIN-like arabinogalactan protein 18 precursor (.1) AT2G35860 219 / 7e-67 FLA16 FASCICLIN-like arabinogalactan protein 16 precursor (.1) AT3G52370 215 / 2e-65 FLA15 FASCICLIN-like arabinogalactan protein 15 precursor (.1) AT5G05650 86 / 5e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013604 [exp] 292 / 4e-95 AT5G06390 619 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Lus10029353 [exp] 255 / 1e-79 AT5G06390 600 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Lus10016194 [exp] 167 / 9e-48 AT3G11700 492 / 5e-174 FASCICLIN-like arabinogalactan protein 18 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G200300 [exp] 228 / 3e-70 AT5G06390 616 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.016G066500 [exp] 226 / 3e-69 AT5G06390 620 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.019G008400 [exp] 193 / 8e-58 AT5G06390 414 / 5e-143 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.010G198250 [exp] 192 / 8e-58 AT5G06390 404 / 1e-139 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.010G244900 [exp] 195 / 1e-57 AT5G06390 580 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.008G012400 [exp] 192 / 1e-56 AT5G06390 577 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.012G006200 [exp] 190 / 6e-56 AT5G06390 400 / 4e-137 FASCICLIN-like arabinogalactan protein 17 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10021247 pacid=23178245 polypeptide=Lus10021247 locus=Lus10021247.g ID=Lus10021247.BGIv1.0 annot-version=v1.0 ATGGATCCCCCTATCTATGGTGTCTCTTTCTTCATCTTCTTCTTCCTCCTCCTCTCCACTTCCACCGCATTGCCCTCCAAATCCACTAACCAAATCAACT CCAACTCCGTCCTTGTCGCCCTCCTCGACTCCCGCTACACTGAGCTCTCCGAGCTCGTCGAAAAGGCCCTTCTCCTCCCGGAGCTCGAAGCCGCCGTCGG AACCCACAACCTAACCATCTTCGCTCCTCGCAACGAAGCTCTCCAGCGTCGGCTAGACCCGGAGTTCAAGCGCTTCCTCCTCGAGCCCCGCAATCTCAAG TCGCTCCAGACCCTCCTCCTCCACCACATTATCCCTTCCCGGGTCGGATCCCCTGACTGGCCTTCCTCCTCATCCGTCTACCCTGCCAAGCACCTCTCCC TCTCATCCCACCACCTCCACCTATCCACCCACCCTTCTTCGTTGAAAAAACTCGTCGGGTCATCCGAGATCGTCAAGCCCGACGACCTCACCCGACCCGA CGGCGTCATCCACGGCATCAACCAGCTTATCGTCCCTCAGTCCGTCCAGGAGGATTTCAACCGCCGGAGAAGCCTCAGATCCATCTCCGCCGTGCTCCCC GAGGGGGCTCCCGAAGTAGATCCGAGAACAAACCGGTTGAAGAAACCCGCACCGTCGGTACCCGCCCGAGCCCCTCCCGTCTTCCCGATTTACGATACCC GCCGGAGCTCCTCCTGTTCTCCCGATTTACGACGCCTTAGCTCCCGGTCCTTCCCTAGCTCCGGCGCCGGCTCCCGGCCCTGGAGGCCCTCGCCACCACT TCGATGGGCACACCCAGGTGAAGGATTTCATTCACACTCTGTTGCATTACGGTGGACAGAAGAAACTATGGACAATGCAGTGAGAAGATTCGGGAAAGTT AAGTACGATACTCTCCGGTTGCCACACAAGGTCACTGCCCAGGAGGCAGACGGGTCGGTCAAATTCGGAGCGGGTGACGTGTCGGCTTATCTTTTCGACC CGGATATCTACACCGACGGGAGGATATCAGTACAAGGAGTTGACGGGATACTGTTCCCGGAGACAGAGTCAACGGAGGAGCCGTTGAGGAAACCAGCTAG TCCCGTGAAAGTCGTCTCCAAGCTCAGGAGAGGGAAATTAATGGAGGTAGCCTGTAGTGTGGTTGGATCTTATTTTACCGCTTCTTGCCAATGA
AA sequence Show only first row Show all	>Lus10021247 pacid=23178245 polypeptide=Lus10021247 locus=Lus10021247.g ID=Lus10021247.BGIv1.0 annot-version=v1.0 MDPPIYGVSFFIFFFLLLSTSTALPSKSTNQINSNSVLVALLDSRYTELSELVEKALLLPELEAAVGTHNLTIFAPRNEALQRRLDPEFKRFLLEPRNLK SLQTLLLHHIIPSRVGSPDWPSSSSVYPAKHLSLSSHHLHLSTHPSSLKKLVGSSEIVKPDDLTRPDGVIHGINQLIVPQSVQEDFNRRRSLRSISAVLP EGAPEVDPRTNRLKKPAPSVPARAPPVFPIYDTRRSSSCSPDLRRLSSRSFPSSGAGSRPWRPSPPLRWAHPGEGFHSHSVALRWTEETMDNAVRRFGKV KYDTLRLPHKVTAQEADGSVKFGAGDVSAYLFDPDIYTDGRISVQGVDGILFPETESTEEPLRKPASPVKVVSKLRRGKLMEVACSVVGSYFTASCQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35860		FLA16	FASCICLIN-like arabinogalactan...		Lus10021247 [exp]	0	1
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10013604 [exp]	1.0	0.9764
AT1G04360			RING/U-box superfamily protein...		Lus10021197 [exp]	2.8	0.9430
AT2G36210			SAUR-like auxin-responsive pro...		Lus10021341 [exp]	6.7	0.9429
AT5G67540			Arabinanase/levansucrase/inver...		Lus10019280 [exp]	9.2	0.9332
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10037737 [exp]	10.9	0.9490
AT1G24030			Protein kinase superfamily pro...		Lus10029187 [exp]	11.0	0.9305
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10018801 [exp]	11.1	0.9478
AT1G24030			Protein kinase superfamily pro...		Lus10010703 [exp]	13.0	0.9453
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10009254 [exp]	14.9	0.9485
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10025876 [exp]	15.3	0.9209

Compare expression of checked genes

Lus10021247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.