Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10660 796 / 0 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT5G04870 794 / 0 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT2G38910 764 / 0 CPK20 calcium-dependent protein kinase 20 (.1) AT4G35310 710 / 0 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1) AT2G17290 706 / 0 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) AT1G35670 695 / 0 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1) AT4G38230 693 / 0 CPK26, ATCPK26 ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, calcium-dependent protein kinase 26 (.1.2.3) AT4G09570 688 / 0 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT5G23580 652 / 0 ATCDPK9, CPK12, CDPK9, ATCPK12 CALCIUM-DEPENDENT PROTEIN KINASE 12, ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, calmodulin-like domain protein kinase 9 (.1) AT5G12180 632 / 0 CPK17 calcium-dependent protein kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013603 [exp] 1241 / 0 AT3G10660 803 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10028862 [exp] 813 / 0 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10008958 [exp] 811 / 0 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10015992 [exp] 770 / 0 AT2G38910 880 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10012285 [exp] 767 / 0 AT2G38910 884 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10029346 [exp] 749 / 0 AT2G38910 834 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10016200 [exp] 746 / 0 AT2G38910 868 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10029358 [exp] 742 / 0 AT5G04870 672 / 0.0 calcium dependent protein kinase 1 (.1) Lus10022986 [exp] 724 / 0 AT4G35310 950 / 0.0 calmodulin-domain protein kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066700 [exp] 860 / 0 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.006G200600 [exp] 855 / 0 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.008G014700 [exp] 826 / 0 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.010G244800 [exp] 820 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.006G199400 [exp] 761 / 0 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.016G065700 [exp] 753 / 0 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.004G207300 [exp] 719 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.009G168600 [exp] 716 / 0 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.019G083200 [exp] 713 / 0 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1) Potri.T012800 [exp] 704 / 0 AT1G35670 795 / 0.0 calcium-dependent protein kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10021248 pacid=23178264 polypeptide=Lus10021248 locus=Lus10021248.g ID=Lus10021248.BGIv1.0 annot-version=v1.0 ATGGGGAACAATTGTGTTCAAGCAAAGGGTGCATATGCAGCTGGAGGAATGTGCAATCCAGAATGGTGGTCAAAGTCAGCAACACAGCACTTTGATAAGA AGCTATCAGCTAGCAGCAAGAGAATGGAAGAAGCTGCTGCTGTTGATAATCATAAAAATGCAGGTTCAAGAGACTCTGCTCCTGATAAGCCTCCTGAGGC AATGAAGATGGAGAAGAAACCATCTGAAAAGGTGTTTCCTTTTGTGCCCCTGGAGATTGCTAAGCCTCCTGAAGAGCCAAAACAAGCTGCCAAAGTCAAA GAGGCTCCAATGGAATTGCCACCAAAGAGAGTAGAGGTCAAGATGGATCATCATATTTCTGCTAAACCAGCTCAGCCACAAGCTCAACTCGAGCCTGCTC GAATTGAGGTACCGGTCAAGCCGCAGCCCCCTGAGCCACAGTCAAATAGGCCTCCAAAGAAAGCACCTCATGTGAAGAGGATGGCAAGTGCAGGACTCCA GACAGATTCAGTGTTGAAAACCAAGACAGGACATTTGAAGGAGCACTACAACTTGGGCAAGAAACTTGGACATGGCCAATTTGGGACAACTTTCCTGTGT ATAGAGAAAGCAACAGGAAAGCACTATGCTTGTAAATCCATTGCCAAAAGGAAGCTGCTGACTATGGATGATGTGGAGGATGTGAGGAGGGAGATTGAGA TCATGCATCACTTGTCTGGTCACCCTAACATCATACGAATCAAGTCGGCTTTCGAGGATTCTGTTGCTGTTCATGTTGTGATGGAGCTTTGCTCTGGAGG TGAGCTGTTTGATAGGATCATTAGGAGAGGTCATTACAGTGAGAGGAAAGCTGCTCAGATCACTAGGACTATCTTTGGGGTCATTGCAAACTGTCATTCT CTAGGAGTGATGCATAGAGATTTGAAACCTGAGAATTTCCTCTTTGTTGATGAGAATGAAGAGTCTCATCTCAAGGCTATTGATTTTGGACTATCAGTAT TCTTCAAGCCTGGCCGGAATTTCAATGATGTGGTTGGAAGCCCTTACTATGTTGCACCAGAAGTTCTAAAGAAGAGGTATGGTCCTGAAGCTGATGTGTG GAGTGCTGGAGTCATGGTTTACATTCTCTTAAGTGGAGTTCCTCCTTTCTGGGCTGAAACTGAAGATGAGATTTTCCAAGAGGTTTTGCAAGGGGATCTG GACTTCAACTCAGATCCTTGGCCTCAAATCTCCGAGAGTGCTAAAGATTTGGTAAGGAGAATGCTTGTAAGAGACCCCAAGAAGAGGATAACCACCCATG CAGTTCTCTGCCACCCTTGGGTCAGAGAAGATGGAGTGGCACCTGACAAGCCTCTTGATTCAGCTGTCCTGTCTCGTTTGAAACATTTCTCTGCCATGAA CAGGCTGAAGAAAATGGCACTGAGAGTAATTGCAGAGAAACTGTCTGAAGAAGAGATTGCAGGGCTGAGGGAAATGTTCAAGATGATAGACACGGATAAC AGTGGCTCCATCACCTTTGAAGAACTCAAAGTTGGACTCAAAAAGTTTGGTGCAAACCTTCATGAGTCTGAAATCTATGACCTCATGCAAGCGGCTGATA TCGACAACAATGGGACAATCGATTACGCTGAGTTCATAGCAGCAACATTGCACCTAAACAAAGTGGAGAAGGAAGATCATCTCTTTGCAGCGTTTTCTTA CTTTGACAAGGATGGAAGTGGCTACATTACAATGGATGAGCTTCAACAAGCCTGCAACGAGTTCGGGATGGAGGCTGTTCACTTGGAAGATATGATCCGA GAAGTGGATCAGGATAATGATGGTCGCATAGATTACAGTGAGTTTGTGGCAATGATGCAAATGGGTAACACTGAAATTGGTAAGAATGGTGTGAAGGGTA GAAATGTGGGGATTTCATTTAGGGATGCATTGCCAGTTTGCTGA
AA sequence Show only first row Show all	>Lus10021248 pacid=23178264 polypeptide=Lus10021248 locus=Lus10021248.g ID=Lus10021248.BGIv1.0 annot-version=v1.0 MGNNCVQAKGAYAAGGMCNPEWWSKSATQHFDKKLSASSKRMEEAAAVDNHKNAGSRDSAPDKPPEAMKMEKKPSEKVFPFVPLEIAKPPEEPKQAAKVK EAPMELPPKRVEVKMDHHISAKPAQPQAQLEPARIEVPVKPQPPEPQSNRPPKKAPHVKRMASAGLQTDSVLKTKTGHLKEHYNLGKKLGHGQFGTTFLC IEKATGKHYACKSIAKRKLLTMDDVEDVRREIEIMHHLSGHPNIIRIKSAFEDSVAVHVVMELCSGGELFDRIIRRGHYSERKAAQITRTIFGVIANCHS LGVMHRDLKPENFLFVDENEESHLKAIDFGLSVFFKPGRNFNDVVGSPYYVAPEVLKKRYGPEADVWSAGVMVYILLSGVPPFWAETEDEIFQEVLQGDL DFNSDPWPQISESAKDLVRRMLVRDPKKRITTHAVLCHPWVREDGVAPDKPLDSAVLSRLKHFSAMNRLKKMALRVIAEKLSEEEIAGLREMFKMIDTDN SGSITFEELKVGLKKFGANLHESEIYDLMQAADIDNNGTIDYAEFIAATLHLNKVEKEDHLFAAFSYFDKDGSGYITMDELQQACNEFGMEAVHLEDMIR EVDQDNDGRIDYSEFVAMMQMGNTEIGKNGVKGRNVGISFRDALPVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10021248 [exp]	0	1
AT3G09830			Protein kinase superfamily pro...		Lus10026523 [exp]	5.5	0.6957
					Lus10016654 [exp]	8.7	0.7241
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10041303 [exp]	15.7	0.6894
AT4G36190			Serine carboxypeptidase S28 fa...		Lus10041817 [exp]	20.9	0.7194
AT5G42140			Regulator of chromosome conden...		Lus10029772 [exp]	22.0	0.6127
AT1G49740			PLC-like phosphodiesterases su...		Lus10014072 [exp]	24.9	0.7061
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10021562 [exp]	28.4	0.6471
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10040165 [exp]	35.4	0.6888
					Lus10039779 [exp]	36.8	0.6640
AT4G36210			Protein of unknown function (D...		Lus10041814 [exp]	47.3	0.6098

Compare expression of checked genes

Lus10021248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.