Plant FIBer expression Database

Lus10021249 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35900 158 / 4e-49 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G066800
[exp]
182 / 1e-58 AT2G35900 199 / 1e-65 unknown protein
PFAM info
Representative CDS sequence
>Lus10021249 pacid=23178169 polypeptide=Lus10021249 locus=Lus10021249.g ID=Lus10021249.BGIv1.0 annot-version=v1.0
ATGGGATGGGTGTGGAGGGACGACGATGAGTCAGAAGAGAGCAAGTCTTCGTCGGCGGCCGGTGAATTTGACGAGGAGAAGAAGGAATCCATGTGGCCAG
ATCAGGGTTGCAGTACGAAGGAAGTGTCGAGAACGAGCTGCAAGACGGAGGAGGTGGAGCCGGGAAGGTTTGTGCTCAAGTGCGAGAAGACTAAGGAGGT
TCTCAGAGAGTGCCTTGGAAAGCCAGCTGAAGTGCTTCAATCAACGAAAGAGTACACCGAAGAAGACGTGACGGACCAGATGACCAAAGGACCATTTACA
AAAGACAAACATGAAATTGAAGGAGGACCATTCACCTTCCCCGGGCTTCAAAGCGATATAAGCGAGATCGAACGCCACTTTGCTGGACACTTGGACCGCT
TCTTGCAAGCAGCTGAAGAGATGAAGAGCAGCTTATTCGATGTTTTTGAGGACTTCCCCGGCCAGAACTCCTCGCGGCCATCATCCATGAGGCCAAACAT
CCCCATCGATGGCCATCACGAGGAGAGAACTGATCCTAAGCAGGAAGGAAGCAAGAACGGATATGTAGACATCTCAGGTCTGGCCAAGGAAGTCTAA
AA sequence
>Lus10021249 pacid=23178169 polypeptide=Lus10021249 locus=Lus10021249.g ID=Lus10021249.BGIv1.0 annot-version=v1.0
MGWVWRDDDESEESKSSSAAGEFDEEKKESMWPDQGCSTKEVSRTSCKTEEVEPGRFVLKCEKTKEVLRECLGKPAEVLQSTKEYTEEDVTDQMTKGPFT
KDKHEIEGGPFTFPGLQSDISEIERHFAGHLDRFLQAAEEMKSSLFDVFEDFPGQNSSRPSSMRPNIPIDGHHEERTDPKQEGSKNGYVDISGLAKEV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G35900 unknown protein Lus10021249
[exp]
0 1
AT2G36930 C2H2ZnF zinc finger (C2H2 type) family... Lus10023928
[exp]
1.0 0.8848
AT5G22060 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMO... Lus10008652
[exp]
2.4 0.8435
AT1G71780 unknown protein Lus10040812
[exp]
2.6 0.8415
AT5G51740 Peptidase family M48 family pr... Lus10038897
[exp]
2.8 0.8542
AT1G11840 ATGLX1 glyoxalase I homolog (.1.2.3.4... Lus10002943
[exp]
3.2 0.8709
AT1G76060 EMB1793 EMBRYO DEFECTIVE 1793, LYR fam... Lus10005621
[exp]
4.2 0.8626
AT4G18372 Small nuclear ribonucleoprotei... Lus10042823
[exp]
6.6 0.8340
AT3G20890 RNA-binding (RRM/RBD/RNP motif... Lus10030139
[exp]
6.9 0.8251
AT1G55460 C2H2ZnF DNA/RNA-binding protein Kin17,... Lus10001696
[exp]
7.2 0.8323
AT1G76060 EMB1793 EMBRYO DEFECTIVE 1793, LYR fam... Lus10017248
[exp]
8.4 0.8055

Lus10021249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.