Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06400 985 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 233 / 7e-63 PGR3 proton gradient regulation 3 (.1) AT5G57250 169 / 7e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 162 / 1e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 158 / 1e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 155 / 2e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71060 149 / 6e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62680 147 / 6e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74900 145 / 9e-37 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 149 / 2e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013602 [exp] 1498 / 0 AT5G06400 820 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 213 / 1e-56 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10043417 [exp] 172 / 1e-43 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037968 [exp] 159 / 3e-39 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 154 / 6e-38 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008650 [exp] 152 / 2e-37 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018567 [exp] 149 / 4e-37 AT1G03560 862 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10026558 [exp] 149 / 2e-36 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021989 [exp] 149 / 4e-36 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G200800 [exp] 1201 / 0 AT5G06400 1132 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 198 / 8e-52 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.015G105400 [exp] 189 / 5e-49 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G036400 [exp] 169 / 3e-42 AT3G18110 1949 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G014100 [exp] 163 / 5e-41 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G025700 [exp] 154 / 6e-40 AT5G18390 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G123900 [exp] 160 / 2e-39 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 158 / 2e-39 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G368700 [exp] 159 / 3e-39 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 156 / 4e-39 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10021250 pacid=23178250 polypeptide=Lus10021250 locus=Lus10021250.g ID=Lus10021250.BGIv1.0 annot-version=v1.0 ATGAAGCATCTGATCAGGATGGGATTGCTAATCAAGCCGCCATATTCAATCACTACTCCCATTTGCTCCTCTCGTGCATTATCACACCTTTCGTCACTCT TTAGATCGCCTAGAAAATCCAATTCCCCATCCAAAGGAGCTTCATCGCAACATGCTCCTGAATCTAATCCTGGTAGTATTAACTCTCTCTTCCTGCAGAT CGCTGAAATTTTGGGAGCTTATGAAGTCATCCCAGATAGGAACCCAGTTGGGATTTCTGTTTCTGAGAGGACCAAAGCCGAGAAAAGCGAATTCAGCGGA GGGATGAGTGGCTGCTCGCCAGGTGTTTGTGAAAATGCTCGAGAGGAAAAAATGGAGATTTTGGTTTCGGAAGATTTATCTTCAGCTGTACGAGATATTA GTCCTTTGGTTCTGCAGCTTGTTGATGCTGTTAGAGCTGGGGATGATACAGCCTCGATGGAGGAGAGGTTAGAGCGTATGAATTGTCGGTTTGATGCAGA GGTTGTGGAGGAGGTACTTAAGGGGTGTTTTGAAGTGCCGCATCTAGCTTTTAGGTTCTTCAATTGGGTTAGGAACAGAGATGGGTTTCGTCACACGACT GATACTTACAACACCATGCTATATGTAGCTGGTGAAGCTCAAGAATTGGGATTGCTTGATCGTTTGGCTGATGATATGAATGAGAAAGGTGTGGAAAAAG ACTTCAAGACTAGGACCATCCTGATCTCGCAGTATGGGGAGACGAAGCAGCTGGGTAAAGTGCTAATATGCTTTGAGCAGATGAAGAAATCTGGTCCTGA ACCTGACACACAAACATACCAAATGGTGATACAGAGTGCTTGCAACGCTGGAAAGGGTGAAATTGCTTTGGAACTTTACAAGGAGATGGTGCTGGGTAAT ATGGAAGTGGATATAAGTTTGTATGAAGCCCTATTGGATTCCTTAGCAAAGTTGGGAGATTCAAAAGCTGTTAACTTGATCGCTGATGATATGACTCGGG TATCCCAGATCCCAGAACGGTATGCGTACTTATTTGTGCTGAAGAGTTATTGTGAAACCAGGAGAATTAGGGAAGCTTTAGAGCTGATTCGTGATCTCAA AGATAAAGGAATACCACTTGACTTGGAATATTTTGAGACCTTGGTCAAAGGTCTATGTAGAGCTGATAGAATTGGTGATGCTTTGGAGATCATTGAAATT ATGAAGAAAAGAAACTTGGATAGCTGGAAAGTGTATGACTTTGTCATCAGCGCTCACTTAAGAAGCAAAGAACTGTCGAAGGGATTTGATCTATTTGAAA GCATGAAGCAATCTGGATTTAGTCCTACAACTTCCACCTACACAGAGCTAATCCAGCACCTGTTCAACTCTGATGAATATGAAAAAGGATGCAAGTTATA TGCTGAGATGCTGGAAAGAGGGCTTGATGTAGACAGTGAAGCTATTATGGCTGTGGTTGCCGGCCATGTTCGACATGACCATTTATCAGAAGCATGGGAA GTTTTCAGGAGCTTGGAAACAAAAGGTATTAAACCCACCTGGAAATCTTATTCCGTGTTCATTAAGGAGCTTTGCAGAGTTTCAAGAACAGAAGAAGTAT TGAAGGTTATCCATGAATTGCTAGAGTCAGATATGTCTATGAATCATGAAATATTTGACTGGGTTATATCTTGCATGGAGACGAACGGGGAGGTGGAAAA TGTCGAGAAAGTAAAGCAACTTCAGAGAACCTACGGACTGGGATCTCTAGAAGCTGTCCCATCTGTTAACGATGACACGTTAACTGCTGAATTGCTAAAT GTGAAGCGAAGCCGTAAACCACTACTAAAATCAAGTAAGGATTTGGTGCAGGCGGTTCCAAGGGCATATTCCGAGCAGGACTTGCAGGAAATTGCTGGAA TCATATCATCGTTTGGCAATTGGTCGCTCATCGAGGAAGCATTGGAGAAATGCGAGATTAAGTTCACACCAGAGCTAGTGCTGGAAGTTCTGCGCAAATG CAGAATCCATGGGAACAAAGCATTGAACTTCTTCTCATGGGTAGGAAAGCAAACCGGATATTCCCACACTTCGGAAACATACAACATGGCCATGAAAATT TCAGGACGAGGGAAAGATTTTAAGCACATGAGAAGTCTGTTTCACGAGATGAAGAGAAAGCGTTACGCAGTGTCACCAGATACATGGACAATCATGATAA TGCAGTACGGCCGAACTGGTCTTACAGAGATCGCTCTAGAGATCTTCAAAGATATGAAAGCAAGTGGCAGCGACCCTACTGAAAGCACCTACAAACACCT GATCATCTGCCTCTCTGAAGGAAAAGGAAGGAAAGTTGATGAAGCCATGAAAATATTCCAGGAGATGATCCGAGCAGGGTTCATCCCAGACCGGGAAATG GCTGAAACTTACATCCGTTGCTTGTGTGAATCCAATAAGCTACCAGAAGCCAGAAGATGCATCAAATCTCTATGTAAAGTCGGATTTTCAGTTCCATTCG CCCGATCCTTGTACATCCGAGCACTTTGCAGGATTGGCAGATTGGACGAAGCAATATCTCTGATTGACGAAACTTGGCAGGATCAGAAACTCACACTCGA CAGATCTACTCATGGCAGCCTTGTCCACGGGTTACTAAGAGCAGGAAGAACAGAGGAGGCATTCGCAAAGCTCGACTCCATGAAGGAATCCGGCATCCGT CCAACTTCCCATGTCTACACATCTCTGATAATCCATTTCTTCAAGGAGAAGCAACCCGAAAAGGCCCTGGAAACCTTGGAGAAAATGCAGGAAGAAGGCT GCAAGCCTTCCATCGTCACACATTCGGCCATGATTCGCGGGTACATGAACTTGGGAAGAACGTCTGAAGCTTGGAGCGTCTTCAATCGTCTGAAACAGGA AGGTCCTCCCCCTGATTTCCAGACGTATTCCATGTTCATCAACTGCCTGTGCAAGGCTGAGGAGTCTGAACAGGCTCTGCAGCTTGTGTCTGAAATGATG GAGAGTAAGATAGTTCCAAGTACTTATAACTTCAGAGAAGTCTTCTTTGGGCTGAACAGAGAAGGGAAGCAAGATTTAGCTCGGGGCGTTCTGCAGCAGA AGTGGGATTTGATCAAGAAACGCAAATTCCTAACTTAG
AA sequence Show only first row Show all	>Lus10021250 pacid=23178250 polypeptide=Lus10021250 locus=Lus10021250.g ID=Lus10021250.BGIv1.0 annot-version=v1.0 MKHLIRMGLLIKPPYSITTPICSSRALSHLSSLFRSPRKSNSPSKGASSQHAPESNPGSINSLFLQIAEILGAYEVIPDRNPVGISVSERTKAEKSEFSG GMSGCSPGVCENAREEKMEILVSEDLSSAVRDISPLVLQLVDAVRAGDDTASMEERLERMNCRFDAEVVEEVLKGCFEVPHLAFRFFNWVRNRDGFRHTT DTYNTMLYVAGEAQELGLLDRLADDMNEKGVEKDFKTRTILISQYGETKQLGKVLICFEQMKKSGPEPDTQTYQMVIQSACNAGKGEIALELYKEMVLGN MEVDISLYEALLDSLAKLGDSKAVNLIADDMTRVSQIPERYAYLFVLKSYCETRRIREALELIRDLKDKGIPLDLEYFETLVKGLCRADRIGDALEIIEI MKKRNLDSWKVYDFVISAHLRSKELSKGFDLFESMKQSGFSPTTSTYTELIQHLFNSDEYEKGCKLYAEMLERGLDVDSEAIMAVVAGHVRHDHLSEAWE VFRSLETKGIKPTWKSYSVFIKELCRVSRTEEVLKVIHELLESDMSMNHEIFDWVISCMETNGEVENVEKVKQLQRTYGLGSLEAVPSVNDDTLTAELLN VKRSRKPLLKSSKDLVQAVPRAYSEQDLQEIAGIISSFGNWSLIEEALEKCEIKFTPELVLEVLRKCRIHGNKALNFFSWVGKQTGYSHTSETYNMAMKI SGRGKDFKHMRSLFHEMKRKRYAVSPDTWTIMIMQYGRTGLTEIALEIFKDMKASGSDPTESTYKHLIICLSEGKGRKVDEAMKIFQEMIRAGFIPDREM AETYIRCLCESNKLPEARRCIKSLCKVGFSVPFARSLYIRALCRIGRLDEAISLIDETWQDQKLTLDRSTHGSLVHGLLRAGRTEEAFAKLDSMKESGIR PTSHVYTSLIIHFFKEKQPEKALETLEKMQEEGCKPSIVTHSAMIRGYMNLGRTSEAWSVFNRLKQEGPPPDFQTYSMFINCLCKAEESEQALQLVSEMM ESKIVPSTYNFREVFFGLNREGKQDLARGVLQQKWDLIKKRKFLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06400			Pentatricopeptide repeat (PPR)...		Lus10021250 [exp]	0	1
AT2G34357			ARM repeat superfamily protein...		Lus10041231 [exp]	1.4	0.9146
AT2G33680			Tetratricopeptide repeat (TPR)...		Lus10021232 [exp]	2.0	0.9117
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10034355 [exp]	4.5	0.8996
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10023710 [exp]	5.7	0.8892
AT2G46050			Pentatricopeptide repeat (PPR-...		Lus10036375 [exp]	5.7	0.8925
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10038291 [exp]	6.0	0.8913
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10006875 [exp]	9.5	0.8659
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Lus10005916 [exp]	9.5	0.8971
AT3G16840			P-loop containing nucleoside t...		Lus10023706 [exp]	11.8	0.8638
AT4G23540			ARM repeat superfamily protein...		Lus10035446 [exp]	15.0	0.9017

Compare expression of checked genes

Lus10021250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.